Evidence map›Paper›PMID 29636446›Full record

ArticleNature communications2018

Population genomics of finless porpoises reveal an incipient cetacean species adapted to freshwater.

Xuming Zhou, Xuanmin Guang, Di Sun, Shixia Xu, Mingzhou Li, Inge Seim, Wencai Jie, Linfeng Yang, Qianhua Zhu, Jiabao Xu and 11 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
9.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 132 citations in OpenAlex.

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  15. Delimitation of EndangeredAnimals : an open access journal from MDPI · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 7 institutions in 4 countries.

Xuming ZhouJiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, 210023, Nanjing, China.
Xuanmin GuangBGI-Shenzhen, 518083, Shenzhen, China.
Di SunJiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, 210023, Nanjing, China.
Shixia XuJiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, 210023, Nanjing, China.
Mingzhou LiInstitute of Animal Genetics and Breeding, College of Animal Science and Technology, Sichuan Agricultural University, 611130, Chengdu, China.
Inge SeimComparative and Endocrine Biology Laboratory, Translational Research Institute-Institute of Health and Biomedical Innovation, School of Biomedical Sciences, Queensland University of Technology, Woolloongabba, QLD, 4102, Australia.
Wencai JieBGI-Shenzhen, 518083, Shenzhen, China.
Linfeng YangBGI-Shenzhen, 518083, Shenzhen, China.
Qianhua ZhuBGI-Shenzhen, 518083, Shenzhen, China.
Jiabao XuBGI-Shenzhen, 518083, Shenzhen, China.
Qiang GaoBGI-Shenzhen, 518083, Shenzhen, China.
Alaattin KayaDivision of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Harvard Medical School, Boston, MA, 02115, USA.ORCID http://orcid.org/0000-0002-6132-5197
Qianhui DouDivision of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Harvard Medical School, Boston, MA, 02115, USA.
Bingyao ChenJiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, 210023, Nanjing, China.
Wenhua RenJiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, 210023, Nanjing, China.
Shuaicheng LiDepartment of Computer Sciences, City University of Hong Kong, 999077, Hong Kong, China.
Kaiya ZhouJiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, 210023, Nanjing, China.
Vadim N GladyshevDivision of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Harvard Medical School, Boston, MA, 02115, USA.
Rasmus NielsenDepartment of Integrative Biology, University of California, Berkeley, CA, 94720, USA. rasmus_nielsen@berkeley.edu.ORCID http://orcid.org/0000-0003-0513-6591
Xiaodong FangBGI-Shenzhen, 518083, Shenzhen, China. fangxd@genomics.cn.
Guang YangJiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, 210023, Nanjing, China. gyang@njnu.edu.cn.
BGI Group (China) · CNNanjing Normal University · CNBrigham and Women's Hospital · USCity University of Hong Kong · HKSichuan Agricultural University · CNTranslational Research Institute · AUUniversity of California, Berkeley · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cetaceans (whales, dolphins, and porpoises) are a group of mammals adapted to various aquatic habitats, from oceans to freshwater rivers. We report the sequencing, de novo assembly and analysis of a finless porpoise genome, and the re-sequencing of an additional 48 finless porpoise individuals. We use these data to reconstruct the demographic history of finless porpoises from their origin to the occupation into the Yangtze River. Analyses of selection between marine and freshwater porpoises identify genes associated with renal water homeostasis and urea cycle, such as urea transporter 2 and angiotensin I-converting enzyme 2, which are likely adaptations associated with the difference in osmotic stress between ocean and rivers. Our results strongly suggest that the critically endangered Yangtze finless porpoises are reproductively isolated from other porpoise populations and harbor unique genetic adaptations, supporting that they should be considered a unique incipient species.

Indexed as

GenomeMetagenomicsPhylogenyAdaptation, BiologicalAnimalsBiological EvolutionChinaChromosome MappingPorpoisesReproductive IsolationRiversSeawaterWater-Electrolyte Balance

Identifiers

PMID29636446
PMCPMC5893588
OpenAlexW2797566759

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.