Evidence map›Paper›PMID 29636069›Full record

ArticleRetrovirology2018

New World feline APOBEC3 potently controls inter-genus lentiviral transmission.

Yoriyuki Konno, Shumpei Nagaoka, Izumi Kimura, Keisuke Yamamoto, Yumiko Kagawa, Ryuichi Kumata, Hirofumi Aso, Mahoko Takahashi Ueda, So Nakagawa, Tomoko Kobayashi and 2 more

Open access · goldAbstract read
In one paragraph

Article in Retrovirology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Yoriyuki KonnoLaboratory of Systems Virology, Institute for Frontier Life and Medical Sciences, Kyoto University, Kyoto, Japan.
Shumpei NagaokaLaboratory of Systems Virology, Institute for Frontier Life and Medical Sciences, Kyoto University, Kyoto, Japan.
Izumi KimuraLaboratory of Systems Virology, Institute for Frontier Life and Medical Sciences, Kyoto University, Kyoto, Japan.
Keisuke YamamotoLaboratory of Systems Virology, Institute for Frontier Life and Medical Sciences, Kyoto University, Kyoto, Japan.
Yumiko KagawaLaboratory of Systems Virology, Institute for Frontier Life and Medical Sciences, Kyoto University, Kyoto, Japan.
Ryuichi KumataLaboratory of Systems Virology, Institute for Frontier Life and Medical Sciences, Kyoto University, Kyoto, Japan.
Hirofumi AsoLaboratory of Systems Virology, Institute for Frontier Life and Medical Sciences, Kyoto University, Kyoto, Japan.
Mahoko Takahashi UedaMicro/Nano Technology Center, Tokai University, Kanagawa, Japan.
So NakagawaMicro/Nano Technology Center, Tokai University, Kanagawa, Japan.ORCID 0000-0003-1760-3839
Tomoko KobayashiDepartment of Animal Science, Faculty of Agriculture, Tokyo University of Agriculture, Kanagawa, Japan.
Yoshio KoyanagiLaboratory of Systems Virology, Institute for Frontier Life and Medical Sciences, Kyoto University, Kyoto, Japan.
Kei SatoLaboratory of Systems Virology, Institute for Frontier Life and Medical Sciences, Kyoto University, Kyoto, Japan. ksato@ims.u-tokyo.ac.jp.ORCID 0000-0003-4431-1380
Kyoto University · JPTokai University · JPTokyo University of Agriculture · JP

Funding

Japan Agency for Medical Research and Development J-PRIDE 17fm0208006h0001Japan Agency for Medical Research and Development Research on HIV/AIDS 16fk0410203h002Japan Science and Technology Agency CRESTJapan Society for the Promotion of Science A. Advanced Research NetworksJapan Society for the Promotion of Science Core-to-Core programJapan Society for the Promotion of Science Scientific Research B (Generative Research Fields) 16KT0111Japan Society for the Promotion of Science Scientific Research C 15K07166Japan Society for the Promotion of Science Scientific Research on Innovative Areas 16H06429Japan Society for the Promotion of Science Scientific Research on Innovative Areas 16K21723Japan Society for the Promotion of Science Scientific Research on Innovative Areas 17H05813Japan Society for the Promotion of Science Scientific Research on Innovative Areas 17H05823Ministry of Education, Culture, Sports, Science and Technology MEXT-Supported Program for the Strategic Research Foundation at Private Universities
6 · The paper itself

Abstract

backgroundThe apolipoprotein B mRNA-editing enzyme catalytic polypeptide-like 3 (APOBEC3; A3) gene family appears only in mammalian genomes. Some A3 proteins can be incorporated into progeny virions and inhibit lentiviral replication. In turn, the lentiviral viral infectivity factor (Vif) counteracts the A3-mediated antiviral effect by degrading A3 proteins. Recent investigations have suggested that lentiviral vif genes evolved to combat mammalian APOBEC3 proteins, and have further proposed that the Vif-A3 interaction may help determine the co-evolutionary history of cross-species lentiviral transmission in mammals.

resultsHere we address the co-evolutionary relationship between two New World felids, the puma (Puma concolor) and the bobcat (Lynx rufus), and their lentiviruses, which are designated puma lentiviruses (PLVs). We demonstrate that PLV-A Vif counteracts the antiviral action of APOBEC3Z3 (A3Z3) of both puma and bobcat, whereas PLV-B Vif counteracts only puma A3Z3. The species specificity of PLV-B Vif is irrespective of the phylogenic relationships of feline species in the genera Puma, Lynx and Acinonyx. We reveal that the amino acid at position 178 in the puma and bobcat A3Z3 is exposed on the protein surface and determines the sensitivity to PLV-B Vif-mediated degradation. Moreover, although both the puma and bobcat A3Z3 genes are polymorphic, their sensitivity/resistance to PLV Vif-mediated degradation is conserved.

conclusionsTo the best of our knowledge, this is the first study suggesting that the host A3 protein potently controls inter-genus lentiviral transmission. Our findings provide the first evidence suggesting that the co-evolutionary arms race between lentiviruses and mammals has occurred in the New World.

Indexed as

AnimalsCatsCytosine DeaminaseDisease ResistanceEvolution, MolecularGene Products, vifHost-Pathogen InteractionsImmunodeficiency Virus, FelineLentivirusLentivirus InfectionsLoss of Function MutationModels, MolecularPhylogenyPolymorphism, GeneticProtein ConformationProteolysisCytosine DeaminaseGene Products, vifThreonineAPOBEC3BobcatEvolutionary arms raceFIVLentivirusNew WorldPLVPumaVif

Identifiers

PMID29636069
PMCPMC5894237
OpenAlexW2804389773

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.