Evidence map›Paper›PMID 29636007›Full record

ArticleBMC genomics2018

DNA methylation profiles correlated to striped bass sperm fertility.

L Curry Woods, Yaokun Li, Yi Ding, Jianan Liu, Benjamin J Reading, S Adam Fuller, Jiuzhou Song

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 42 citations in OpenAlex.

  1. Review
  2. Article
  3. Insights intoBiomolecules · 2025
    Article
  4. DNA Methylation Mediates Sperm Quality viaInternational journal of molecular sciences · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

L Curry WoodsDepartment of Animal and Avian Sciences, University of Maryland, College Park, MD, 20742, USA.
Yaokun LiCollege of Animal Science, South China Agricultural University, Guangzhou, GD, 510642, China. liyaokun1986@163.com.
Yi DingDepartment of Animal and Avian Sciences, University of Maryland, College Park, MD, 20742, USA.
Jianan LiuDepartment of Animal and Avian Sciences, University of Maryland, College Park, MD, 20742, USA.
Benjamin J ReadingDepartment of Applied Ecology, North Carolina State University, Raleigh, NC, 27695, USA.
S Adam FullerHKD Stuttgart National Aquaculture Research Center, Agricultural Research Service, US Department of Agriculture, Stuttgart, AR, 72160, USA.
Jiuzhou SongDepartment of Animal and Avian Sciences, University of Maryland, College Park, MD, 20742, USA. songj88@umd.edu.ORCID 0000-0002-6973-5959
University of Maryland, College Park · USAgricultural Research Service · USNorth Carolina State University · USSouth China Agricultural University · CN

Funding

USDA/NRAC Seed grant
6 · The paper itself

Abstract

backgroundStriped bass (Morone saxatilis) spermatozoa are used to fertilize in vitro the eggs of white bass (M. chrysops) to produce the preferred hybrid for the striped bass aquaculture industry. Currently, only one source of domestic striped bass juveniles is available to growers that is not obtained from wild-caught parents and is thus devoid of any genetic improvement in phenotypic traits of importance to aquaculture. Sperm epigenetic modification has been predicted to be associated with fertility, which could switch genes on and off without changing the DNA sequence itself. DNA methylation is one of the most common epigenetic modification types and changes in sperm epigenetics can be correlated to sub-fertility or infertility in male striped bass. The objective of this study was to find the differentially methylated regions (DMRs) between high-fertility and sub-fertility male striped bass, which could potentially regulate the fertility performance.

resultsIn our present study, we performed DNA methylation analysis of high-fertility and sub-fertility striped bass spermatozoa through MBD-Seq methods. A total of 171 DMRs were discovered in striped bass sperm correlated to fertility. Based on the annotation of these DMRs, we conducted a functional classification analysis and two important groups of genes including the WDR3/UTP12 and GPCR families, were discovered to be related to fertility performance of striped bass. Proteins from the WDR3/UTP12 family are involved in forming the sperm flagella apparatus in vertebrates and GPCRs are involved in hormonal signaling and regulation of tissue development, proliferation and differentiation.

conclusionsOur results contribute insights into understanding the mechanism of fertility in striped bass, which will provide powerful tools to maximize reproductive efficiencies and to identify those males with superior gametes for this important aquaculture species.

Indexed as

DNA MethylationAnimalsBassFertilityGene OntologyMaleSequence Analysis, DNASpermatozoaAquacultureFertilityMethylationSemenStriped bass

Identifiers

PMID29636007
PMCPMC5894188
OpenAlexW2801128892

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.