Evidence map›Paper›PMID 29635365›Full record

ArticleGenome biology and evolution2018

Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing.

Kåre Olav Holm, Cecilie Bækkedal, Jenny Johansson Söderberg, Peik Haugen

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  3. Comparative Genomics Analysis ofMicroorganisms · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Kåre Olav HolmDepartment of Chemistry and Center for Bioinformatics (SfB), Faculty of Science and Technology, UiT?-?The Arctic University of Norway, Tromsø, Norway.
Cecilie BækkedalDepartment of Chemistry and Center for Bioinformatics (SfB), Faculty of Science and Technology, UiT?-?The Arctic University of Norway, Tromsø, Norway.
Jenny Johansson SöderbergDepartment of Chemistry and Center for Bioinformatics (SfB), Faculty of Science and Technology, UiT?-?The Arctic University of Norway, Tromsø, Norway.
Peik HaugenDepartment of Chemistry and Center for Bioinformatics (SfB), Faculty of Science and Technology, UiT?-?The Arctic University of Norway, Tromsø, Norway.
UiT The Arctic University of Norway · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We report here the complete genome sequences of seven Vibrio anguillarum strains isolated from multiple geographic locations, thus increasing the total number of genomes of finished quality to 11. The genomes were de novo assembled from long-sequence PacBio reads. Including draft genomes, a total of 44 V. anguillarum genomes are currently available in the genome databases. They represent an important resource in the study of, for example, genetic variations and for identifying virulence determinants. In this article, we present the genomes and basic genome comparisons of the 11 complete genomes, including a BRIG analysis, and pan genome calculation. We also describe some structural features of superintegrons on chromosome 2 s, and associated insertion sequence (IS) elements, including 18 new ISs (ISVa3 - ISVa20), both of importance in the complement of V. anguillarum genomes.

Indexed as

Whole Genome SequencingDNA Transposable ElementsGenome, BacterialHigh-Throughput Nucleotide SequencingMolecular Sequence AnnotationSequence Analysis, DNAVibrioDNA Transposable Elements

Identifiers

PMID29635365
PMCPMC5905569
OpenAlexW2797114063

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.