Evidence map›Paper›PMID 29633551›Full record

ArticleThe FEBS journal2018

The single berberine bridge enzyme homolog of Physcomitrella patens is a cellobiose oxidase.

Marina Toplak, Gertrud Wiedemann, Jelena Ulićević, Bastian Daniel, Sebastian N W Hoernstein, Jennifer Kothe, Johannes Niederhauser, Ralf Reski, Andreas Winkler, Peter Macheroux

Abstract read
In one paragraph

Article in The FEBS journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Differential prolyl hydroxylation by six Physcomitrella prolyl-4 hydroxylases.Computational and structural biotechnology journal · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Marina ToplakInstitute of Biochemistry, Graz University of Technology, Austria.
Gertrud WiedemannPlant Biotechnology, Faculty of Biology, University of Freiburg, Germany.
Jelena UlićevićInstitute of Biochemistry, Graz University of Technology, Austria.
Bastian DanielInstitute of Biochemistry, Graz University of Technology, Austria.
Sebastian N W HoernsteinPlant Biotechnology, Faculty of Biology, University of Freiburg, Germany.
Jennifer KothePlant Biotechnology, Faculty of Biology, University of Freiburg, Germany.
Johannes NiederhauserInstitute of Biochemistry, Graz University of Technology, Austria.
Ralf ReskiPlant Biotechnology, Faculty of Biology, University of Freiburg, Germany.
Andreas WinklerInstitute of Biochemistry, Graz University of Technology, Austria.
Peter MacherouxInstitute of Biochemistry, Graz University of Technology, Austria.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The berberine bridge enzyme from the California poppy Eschscholzia californica (EcBBE) catalyzes the oxidative cyclization of (S)-reticuline to (S)-scoulerine, that is, the formation of the berberine bridge in the biosynthesis of benzylisoquinoline alkaloids. Interestingly, a large number of BBE-like genes have been identified in plants that lack alkaloid biosynthesis. This finding raised the question of the primordial role of BBE in the plant kingdom, which prompted us to investigate the closest relative of EcBBE in Physcomitrella patens (PpBBE1), the most basal plant harboring a BBE-like gene. Here, we report the biochemical, structural, and in vivo characterization of PpBBE1. Our studies revealed that PpBBE1 is structurally and biochemically very similar to EcBBE. In contrast to EcBBE, we found that PpBBE1 catalyzes the oxidation of the disaccharide cellobiose to the corresponding lactone, that is, PpBBE1 is a cellobiose oxidase. The enzymatic reaction mechanism was characterized by a structure-guided mutagenesis approach that enabled us to assign a catalytic role to amino acid residues in the active site of PpBBE1. In vivo experiments revealed the highest level of PpBBE1 expression in chloronema, the earliest stage of the plant's life cycle, where carbon metabolism is strongly upregulated. It was also shown that the enzyme is secreted to the extracellular space, where it may be involved in later steps of cellulose degradation, thereby allowing the moss to make use of cellulose for energy production. Overall, our results suggest that the primordial role of BBE-like enzymes in plants revolved around primary metabolic reactions in carbohydrate utilization. DATABASE: Structural data are available in the PDB under the accession numbers 6EO4 and 6EO5.

Indexed as

BerberineBryopsidaCarbohydrate DehydrogenasesCatalysisCatalytic DomainCelluloseCrystallography, X-RayCyclizationEschscholziaGene Expression Regulation, EnzymologicGene Expression Regulation, PlantGenes, PlantMutagenesis, Site-DirectedProtein ConformationSubstrate SpecificityUp-RegulationBerberineCarbohydrate Dehydrogenasescellobiose oxidaseCelluloseenzyme catalysisenzyme mechanismflavin adenine dinucleotideplant biochemistryprotein structure

Identifiers

PMID29633551
PMCPMC6001459

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.