Evidence map›Paper›PMID 29632810›Full record

ArticleFEBS open bio2018

Tropomyosin isoforms have specific effects on the transcriptome of undifferentiated and differentiated B35 neuroblastoma cells.

Holly Stefen, Alexandra Kalyna Suchowerska, Bei Jun Chen, Merryn Brettle, Jennifer Kuschelewski, Peter William Gunning, Michael Janitz, Thomas Fath

Open access · goldAbstract read
In one paragraph

Article in FEBS open bio, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.1field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Research Advances in the Role of the Tropomyosin Family in Cancer.International journal of molecular sciences · 2023
    Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Holly StefenNeurodegenerative and Repair Unit School of Medical Science UNSW Sydney NSW Australia.
Alexandra Kalyna SuchowerskaNeurodegenerative and Repair Unit School of Medical Science UNSW Sydney NSW Australia.
Bei Jun ChenSchool of Biotechnology and Biomolecular Sciences UNSW Sydney NSW Australia.
Merryn BrettleNeurodegenerative and Repair Unit School of Medical Science UNSW Sydney NSW Australia.
Jennifer KuschelewskiNeurodegenerative and Repair Unit School of Medical Science UNSW Sydney NSW Australia.
Peter William GunningCellular and Genetic Medicine Unit School of Medical Sciences UNSW Sydney NSW Australia.
Michael JanitzSchool of Biotechnology and Biomolecular Sciences UNSW Sydney NSW Australia.
Thomas FathNeurodegenerative and Repair Unit School of Medical Science UNSW Sydney NSW Australia.ORCID 0000-0002-6877-7567
UNSW Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tropomyosins, a family of actin-associated proteins, bestow actin filaments with distinct biochemical and physical properties which are important for determining cell shape and regulating many cellular processes in eukaryotic cells. Here, we used RNA-seq to investigate the effect of four tropomyosin isoforms on gene expression in undifferentiated and differentiated rat B35 neuroblastoma cells. In undifferentiated cells, overexpression of tropomyosin isoforms Tpm1.12, Tpm2.1, Tpm3.1, and Tpm4.2 differentially regulates a vast number of genes, clustering into several gene ontology terms. In differentiated cells, tropomyosin overexpression exerts a much weaker influence on overall gene expression. Our findings are particularly compelling because they demonstrate that tropomyosin-dependent changes are attenuated once the cells are induced to follow a defined path of differentiation. Database: Sequence data for public availability are deposited in the European Nucleotide Archive under the accession number PRJEB24136.

Indexed as

actin cytoskeletonRNA‐seqtropomyosin isoforms

Identifiers

PMID29632810
PMCPMC5881551
OpenAlexW2790057798

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.