Evidence map›Paper›PMID 29632392›Full record

ArticleScientific reports2018

Targeting the polyadenylation factor EhCFIm25 with RNA aptamers controls survival in Entamoeba histolytica.

Juan David Ospina-Villa, Alexandre Dufour, Christian Weber, Esther Ramirez-Moreno, Absalom Zamorano-Carrillo, Nancy Guillen, César Lopez-Camarillo, Laurence A Marchat

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Aptamer-Based Technologies for Parasite Detection.Sensors (Basel, Switzerland) · 2023
    Review
  5. Article
  6. Aptamer-based approaches for the detection of waterborne pathogens.International microbiology : the official journal of the Spanish Society for Microbiology · 2021
    Review
  7. Review
  8. Review
  9. Review
  10. Review
  11. Recent Advances in Aptamer Discovery and Applications.Molecules (Basel, Switzerland) · 2019
    Review
  12. Review
  13. Article
  14. Life and Death of mRNA Molecules inFrontiers in cellular and infection microbiology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Juan David Ospina-VillaInstituto Politécnico Nacional, Escuela Nacional de Medicina y Homeopatía, Guillermo Massieu Helguera 239, Fracc. La Escalera Ticoman, CP 07320, Ciudad de México, Mexico.
Alexandre DufourInstitut Pasteur, Unité d'Analyse d'Images Biologiques, 25 Rue du Dr Roux, F-75015, Paris, France.ORCID 0000-0002-9417-7389
Christian WeberCentre National de la Recherche Scientifique CNRS UMR 3691, 25 Rue du Dr Roux, F-75015, Paris, France.
Esther Ramirez-MorenoInstituto Politécnico Nacional, Escuela Nacional de Medicina y Homeopatía, Guillermo Massieu Helguera 239, Fracc. La Escalera Ticoman, CP 07320, Ciudad de México, Mexico.
Absalom Zamorano-CarrilloInstituto Politécnico Nacional, Escuela Nacional de Medicina y Homeopatía, Guillermo Massieu Helguera 239, Fracc. La Escalera Ticoman, CP 07320, Ciudad de México, Mexico.
Nancy GuillenCentre National de la Recherche Scientifique, CNRS-ERL9195, 25 Rue du Dr Roux, F-75015, Paris, France.
César Lopez-CamarilloUniversidad Autónoma de la Ciudad de México, Posgrado en Ciencias Genómicas, San Lorenzo 290, Col. Del Valle, CP 03100, Ciudad de México, Mexico.
Laurence A MarchatInstituto Politécnico Nacional, Escuela Nacional de Medicina y Homeopatía, Guillermo Massieu Helguera 239, Fracc. La Escalera Ticoman, CP 07320, Ciudad de México, Mexico. lmarchat@gmail.com.
Instituto Politécnico Nacional · MXCentre National de la Recherche Scientifique · FRUniversidad Autónoma de la Ciudad de México · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Messenger RNA 3'-end polyadenylation is an important regulator of gene expression in eukaryotic cells. In our search for new ways of treating parasitic infectious diseases, we looked at whether or not alterations in polyadenylation might control the survival of Entamoeba histolytica (the agent of amoebiasis in humans). We used molecular biology and computational tools to characterize the mRNA cleavage factor EhCFIm25, which is essential for polyadenylation in E. histolytica. By using a strategy based on the systematic evolution of ligands by exponential enrichment, we identified single-stranded RNA aptamers that target EhCFIm25. The results of RNA-protein binding assays showed that EhCFIm25 binds to the GUUG motif in vitro, which differs from the UGUA motif bound by the homologous human protein. Accordingly, docking experiments and molecular dynamic simulations confirmed that interaction with GUUG stabilizes EhCFIm25. Incubating E. histolytica trophozoites with selected aptamers inhibited parasite proliferation and rapidly led to cell death. Overall, our data indicate that targeting EhCFIm25 is an effective way of limiting the growth of E. histolytica in vitro. The present study is the first to have highlighted the potential value of RNA aptamers for controlling this human pathogen.

Indexed as

Amino Acid MotifsAntiprotozoal AgentsAptamers, NucleotideBinding SitesComputational BiologyEntamoeba histolyticaMolecular Docking SimulationMolecular Dynamics SimulationmRNA Cleavage and Polyadenylation FactorsProtein BindingProtozoan ProteinsRNASELEX Aptamer TechniqueTrophozoitesAntiprotozoal AgentsAptamers, NucleotidemRNA Cleavage and Polyadenylation FactorsProtozoan ProteinsRNA

Identifiers

PMID29632392
PMCPMC5890266
OpenAlexW2797429801

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.