Evidence map›Paper›PMID 29631625›Full record

ArticleHuman genomics2018

Molecular characterization of exonic rearrangements and frame shifts in the dystrophin gene in Duchenne muscular dystrophy patients in a Saudi community.

Nasser A Elhawary, Essam H Jiffri, Samira Jambi, Ahmad H Mufti, Anas Dannoun, Hassan Kordi, Asim Khogeer, Osama H Jiffri, Abdelrahman N Elhawary, Mohammed T Tayeb

Open access · goldAbstract read
In one paragraph

Article in Human genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 25 citations in OpenAlex.

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  10. A novel DMD intronic alteration: a potentially disease-causing variant of an intermediate muscular dystrophy phenotype.Acta myologica : myopathies and cardiomyopathies : official journal of the Mediterranean Society of Myology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Nasser A ElhawaryDepartment of Medical Genetics, Medicine College, Umm Al-Qura University, P.O. Box 57543, Mecca, 21955, Saudi Arabia. naelhawary@uqu.edu.sa.
Essam H JiffriDepartment of Medical Laboratory Technology, Faculty of Applied Medical Sciences, King Abdul-Aziz University, Jeddah, Saudi Arabia.
Samira JambiDepartment of Pediatrics, Al Hada Military Hospital, Al Hada, Saudi Arabia.
Ahmad H MuftiDepartment of Medical Genetics, Medicine College, Umm Al-Qura University, P.O. Box 57543, Mecca, 21955, Saudi Arabia.
Anas DannounDepartment of Medical Genetics, Medicine College, Umm Al-Qura University, P.O. Box 57543, Mecca, 21955, Saudi Arabia.
Hassan KordiDepartment of Medical Genetics, Medicine College, Umm Al-Qura University, P.O. Box 57543, Mecca, 21955, Saudi Arabia.
Asim KhogeerDepartment of Plan and Research, General Directorate of Health Affairs, Mecca Region, Ministry of Health, Mecca, Saudi Arabia.
Osama H JiffriDepartment of Medical Laboratory Technology, Faculty of Applied Medical Sciences, King Abdul-Aziz University, Jeddah, Saudi Arabia.
Abdelrahman N ElhawaryDepartment of Pediatrics, Faculty of Medicine, Cairo University, Giza, Egypt.
Mohammed T TayebDepartment of Medical Genetics, Medicine College, Umm Al-Qura University, P.O. Box 57543, Mecca, 21955, Saudi Arabia.
Umm al-Qura University · SAKing Abdul Aziz University Hospital · SACairo University · EGNational Guard Health Affairs · SA

Funding

Institute of Scientific Research, Umm Al-Qura University 43309030
6 · The paper itself

Abstract

backgroundIn individuals with Duchenne muscular dystrophy (DMD), exon skipping treatment to restore a wild-type phenotype or correct the frame shift of the mRNA transcript of the dystrophin (DMD) gene are mutation-specific. To explore the molecular characterization of DMD rearrangements and predict the reading frame, we simultaneously screened all 79 DMD gene exons of 45 unrelated male DMD patients using a multiplex ligation-dependent probe amplification (MLPA) assay for deletion/duplication patterns. Multiplex PCR was used to confirm single deletions detected by the MLPA.

resultsThere was an obvious diagnostic delay, with an extremely statistically significant difference between the age at initial symptoms and the age of clinical evaluation of DMD cases (t value, 10.3; 95% confidence interval 5.95-8.80, P < 0.0001); the mean difference between the two groups was 7.4 years. Overall, we identified 147 intragenic rearrangements: 46.3% deletions and 53.7% duplications. Most of the deletions (92.5%) were between exons 44 and 56, with exon 50 being the most frequently involved (19.1%). Eight new rearrangements, including a mixed deletion/duplication and double duplications, were linked to seven cases with DMD. Of all the cases, 17.8% had duplications with no hot spots. In addition, confirmation of the reading frame hypothesis helped account for new DMD rearrangements in this study. We found that 81% of our Saudi patients would potentially benefit from exon skipping, of which 42.9% had a mutation amenable to skipping of exon 51.

conclusionsOur study could generate considerable data on mutational rearrangements that may promote future experimental therapies in Saudi Arabia.

Indexed as

Delayed DiagnosisAdolescentChildChild, PreschoolDystrophinExonsFemaleGene DeletionGene DuplicationGene RearrangementHumansInfantMaleMuscular Dystrophy, DuchenneMutationRNA, MessengerDystrophinRNA, MessengerDuchenne muscular dystrophyDystrophin geneFrame shiftLarge rearrangementsMLPASaudi community

Identifiers

PMID29631625
PMCPMC5891934
OpenAlexW2796510743

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.