Evidence map›Paper›PMID 29630943›Full record

ArticleJournal of virological methods2018

A highly sensitive aptamer-based HIV reverse transcriptase detection assay.

Jeffrey J DeStefano, Irani Alves Ferreira-Bravo

Abstract read
In one paragraph

Article in Journal of virological methods, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Jeffrey J DeStefanoDepartment of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD, United States; The Maryland Pathogen Research Institute, University of Maryland, College Park, MD, United States. Electronic address: jdestefa@umd.edu.
Irani Alves Ferreira-BravoDepartment of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD, United States; The Maryland Pathogen Research Institute, University of Maryland, College Park, MD, United States.
University of Maryland, College Park · US

Funding

Biochemistry of HIV reverse transcriptase fidelity and inhibitor interactionsR01GM116645 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI DESTEFANO, JEFFREY J · 2016 to 2018
$924k
Revealing networks targeted by HSV-1 ncRNAs with in vivo gain-of-function studiesR21AI116389 · NIAID · UNIVERSITY OF CINCINNATI · PI SAWTELL, NANCY M., THOMPSON, RICHARD L · 2015 to 2016
$447k
Development of an HIV reverse transcriptase aptamer-based detection assayR03AI116380 · NIAID · UNIV OF MARYLAND, COLLEGE PARK · PI DESTEFANO, JEFFREY J · 2015 to 2016
$152k
NIAID NIH HHS R03 AI116380NIAID NIH HHS R21 AI116389NIGMS NIH HHS R01 GM116645
6 · The paper itself

Abstract

Although many new assays for HIV have been developed, several labs still use simple and reliable radioactivity-based reverse transcriptase (RT) nucleotide incorporation assays for detection and quantification. We describe here a new assay for detection and quantitation of HIV RT activity that is based on a high affinity DNA aptamer to RT. The aptamer is sequestered on 96-well plates where it can bind to RT and other constituents can be removed by extensive washing. Since the aptamer mimics a primer-template, upon radiolabeled nucleotide addition, bound RT molecules can extend the aptamer and the radioactive signal can be detected by standard methods. In addition to being procedurally simple, the assay demonstrated high sensitivity (detection limits for RT and virions were ≤6400 molecules (∼4 × 10

Indexed as

Aptamers, NucleotideHIV-1HIV-2HIV InfectionsHIV Reverse TranscriptaseHumansMolecular Diagnostic TechniquesViral LoadAptamers, NucleotideHIV Reverse TranscriptaseAptamerHIV quantificationReverse transcriptaseSELEX

Identifiers

PMID29630943
PMCPMC5960635
OpenAlexW2795867908

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.