Evidence map›Paper›PMID 29627687›Full record

ArticleMedical image analysis2018

Joint solution for PET image segmentation, denoising, and partial volume correction.

Ziyue Xu, Mingchen Gao, Georgios Z Papadakis, Brian Luna, Sanjay Jain, Daniel J Mollura, Ulas Bagci

Abstract read
In one paragraph

Article in Medical image analysis, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Segmentation of Dynamic Total-Body [International journal of biomedical imaging · 2023
    Article
  8. Article
  9. Computational approaches to detect small lesions inJournal of applied clinical medical physics · 2021
    Article
  10. Voxel-based partial volume correction of PET images via subtle MRI guided non-local means regularization.Physica medica : PM : an international journal devoted to the applications of physics to medicine and biology : official journal of the Italian Association of Biomedical Physics (AIFB) · 2021
    Article
  11. Deep learning-assisted ultra-fast/low-dose whole-body PET/CT imaging.European journal of nuclear medicine and molecular imaging · 2021
    Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ziyue XuCenter for Infectious Disease Imaging (CIDI), Radiology and Imaging Science Department, National Institutes of Health (NIH), Bethesda, MD 20892, USA.
Mingchen GaoCenter for Infectious Disease Imaging (CIDI), Radiology and Imaging Science Department, National Institutes of Health (NIH), Bethesda, MD 20892, USA.
Georgios Z PapadakisCenter for Infectious Disease Imaging (CIDI), Radiology and Imaging Science Department, National Institutes of Health (NIH), Bethesda, MD 20892, USA.
Brian LunaUniversity of California at Irvine, Irvine, CA, USA.
Sanjay JainJohns Hopkins University School of Medicine, Baltimore, MD, USA.
Daniel J MolluraCenter for Infectious Disease Imaging (CIDI), Radiology and Imaging Science Department, National Institutes of Health (NIH), Bethesda, MD 20892, USA.
Ulas BagciUniversity of Central Florida, Orlando, FL, USA. Electronic address: bagci@ucf.edu.

Funding

Novel Imaging Tracers for Rapid and Noninvasive Assessment of Bacterial InfectionR01EB020539 · NIBIB · JOHNS HOPKINS UNIVERSITY · PI JAIN, SANJAY · 2014 to 2018
$3.6M
Molecular Imaging for Pulmonary Infections and InflammationR01HL131829 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI JAIN, SANJAY · 2016 to 2018
$2.2M
Computer-Aided Detection for Infectious Disease ImagingZIACL090018 · CLC · CLINICAL CENTER · PI MOLLURA, DANIEL · 2010 to 2018
$0k
Intramural NIH HHS Z99 CL999999NHLBI NIH HHS R01 HL131829NIBIB NIH HHS R01 EB020539
6 · The paper itself

Abstract

Segmentation, denoising, and partial volume correction (PVC) are three major processes in the quantification of uptake regions in post-reconstruction PET images. These problems are conventionally addressed by independent steps. In this study, we hypothesize that these three processes are dependent; therefore, jointly solving them can provide optimal support for quantification of the PET images. To achieve this, we utilize interactions among these processes when designing solutions for each challenge. We also demonstrate that segmentation can help in denoising and PVC by locally constraining the smoothness and correction criteria. For denoising, we adapt generalized Anscombe transformation to Gaussianize the multiplicative noise followed by a new adaptive smoothing algorithm called regional mean denoising. For PVC, we propose a volume consistency-based iterative voxel-based correction algorithm in which denoised and delineated PET images guide the correction process during each iteration precisely. For PET image segmentation, we use affinity propagation (AP)-based iterative clustering method that helps the integration of PVC and denoising algorithms into the delineation process. Qualitative and quantitative results, obtained from phantoms, clinical, and pre-clinical data, show that the proposed framework provides an improved and joint solution for segmentation, denoising, and partial volume correction.

Indexed as

AlgorithmsAnimalsArtifactsHumansImage EnhancementMagnetic Resonance ImagingNeoplasmsPhantoms, ImagingPositron-Emission TomographyPositron Emission Tomography Computed TomographyRabbitsRadiographic Image Interpretation, Computer-AssistedRadiopharmaceuticalsReproducibility of ResultsSensitivity and SpecificitySignal-To-Noise RatioRadiopharmaceuticalsAffinity propagationDenoisingPartial volume correctionRegional means denoisingSegmentation

Identifiers

PMID29627687
PMCPMC6080255

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.