Evidence map›Paper›PMID 29626419›Full record

ArticleBiochimica et biophysica acta. Bioenergetics2018

The K-path entrance in cytochrome c oxidase is defined by mutation of E101 and controlled by an adjacent ligand binding domain.

Carrie Hiser, Jian Liu, Shelagh Ferguson-Miller

Open access · greenAbstract read
In one paragraph

Article in Biochimica et biophysica acta. Bioenergetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Structural and functional mechanisms of cytochrome c oxidase.Journal of inorganic biochemistry · 2025
    Review
  3. Interaction of Terminal Oxidases with Amphipathic Molecules.International journal of molecular sciences · 2023
    Review
  4. Article
  5. Structural basis of mammalian complex IV inhibition by steroids.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  6. Article
  7. Article
  8. Monomeric structure of an active form of bovine cytochromeProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Carrie HiserDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, United States. Electronic address: hiser@msu.edu.
Jian LiuDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, United States. Electronic address: liujian1@msu.edu.
Shelagh Ferguson-MillerDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, United States. Electronic address: fergus20@msu.edu.
Michigan State University · US

Funding

ORGANIZATION AND CONTROL OF ELECTRON TRANSFER CHAINSR01GM026916 · NIGMS · MICHIGAN STATE UNIVERSITY · PI FERGUSON-MILLER, SHELAGH M · 1985 to 2014
$1.6M
NIGMS NIH HHS R01 GM026916
6 · The paper itself

Abstract

Three mutant forms of Rhodobacter sphaeroides cytochrome c oxidase (RsCcO) were created to test for multiple K-path entry sites (E101W), the existence of an "upper ligand site" (M350 W), and the nature and binding specificity of the "lower ligand site" (P315W/E101A) in the region of a crystallographically-defined deoxycholate at the K-path entrance. The effects of inhibitory and stimulatory detergents (dodecyl maltoside and Tween20) on these mutants are presented, as well as competition with other ligands, including the potentially physiologically relevant ligands cholesterol and retinoic acid. Ligands are shown to be able to compete with natural lipids to affect the activity of membrane-bound RsCcO. Results point to a single K-path entrance site at E101, with a single ligand binding pocket proximal to the entrance. The affinity of this pocket for amphipathic ligands is enhanced by removal of the E101 carboxyl and blocked by substituting a tryptophan in this area. A new crystal structure of the E101A mutant of RsCcO is presented that illustrates the structural basis of these results, showing that the loss of the E101 carboxyl creates a more hydrophobic groove consistent with altered ligand affinities.

Indexed as

MutationBinding SitesDetergentsElectron Transport Complex IVLigandsModels, MolecularProtein BindingProtein DomainsRhodobacter sphaeroidesSubstrate SpecificityDetergentsElectron Transport Complex IVLigandsCytochrome c oxidaseDetergentsK-pathLipidsRetinoic acidSteroids

Identifiers

PMID29626419
PMCPMC6078815
OpenAlexW2795527203

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.