Evidence map›Paper›PMID 29625552›Full record

ArticleBMC plant biology2018

Low pyrrolizidine alkaloid levels in perennial ryegrass is associated with the absence of a homospermidine synthase gene.

Geoffrey P Gill, Catherine J Bryant, Mikhail Fokin, Jan Huege, Karl Fraser, Chris Jones, Mingshu Cao, Marty J Faville

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Geoffrey P GillPastoral Genomics, c/o AgResearch Grasslands Research Centre, Private Bag 11008, Palmerston North, 4442, New Zealand.ORCID http://orcid.org/0000-0002-7213-3588
Catherine J BryantPastoral Genomics, c/o AgResearch Grasslands Research Centre, Private Bag 11008, Palmerston North, 4442, New Zealand.
Mikhail FokinPastoral Genomics, c/o AgResearch Grasslands Research Centre, Private Bag 11008, Palmerston North, 4442, New Zealand.
Jan HuegeAgResearch Grasslands Research Centre, Private Bag 11008, Palmerston North, 4442, New Zealand.
Karl FraserAgResearch Grasslands Research Centre, Private Bag 11008, Palmerston North, 4442, New Zealand.
Chris JonesAgResearch Grasslands Research Centre, Private Bag 11008, Palmerston North, 4442, New Zealand.
Mingshu CaoAgResearch Grasslands Research Centre, Private Bag 11008, Palmerston North, 4442, New Zealand.
Marty J FavilleAgResearch Grasslands Research Centre, Private Bag 11008, Palmerston North, 4442, New Zealand. marty.faville@agresearch.co.nz.
AgResearch · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPyrrolizidine alkaloids (PAs) are a class of secondary metabolites that function as feeding deterrents in a range of different plant species. In perennial ryegrass (Lolium perenne L.) the only PAs that have been identified are the thesinine-rhamnoside group, which displays significant genetic variation. Homospermidine synthase (HSS) has evolved from deoxyhypusine synthase (DHS) and catalyses the first step in the PA pathway, making it a key candidate for the investigation of genes influencing observed PA trait variation.

resultsDuring PCR amplification and sequence analysis of DHS we identified two putative HSS genes in perennial ryegrass. One of the genes (LpHSS1) was absent in some perennial ryegrass plants. Thesinine-rhamnoside levels were measured using liquid chromatography coupled with mass spectrometry in a diverse association mapping population, consisting of 693 plants free of fungal endophytic symbionts. Association tests that accounted for population structure identified a significant association of absence of the LpHSS1 gene with lower levels of thesinine-rhamnoside PAs. HSS-like gene sequences were identified for other grass species of the Poaceae, including tall fescue, wheat, maize and sorghum.

conclusionHSS is situated at the crucial first step in the PA pathway making it an important candidate gene for investigation of involvement in PA phenotypic variation. In this study, PA level in perennial ryegrass was strongly associated with the presence or absence of the LpHSS1 gene. A genetic marker, developed for the presence/absence of LpHSS1, may be used for marker-assisted breeding to either lower or increase PAs in breeding populations of perennial or Italian ryegrass to investigate a potential role in the deterrence of herbivore pests. The presence of HSS-like genes in several other Poaceae species suggests that PA biosynthesis may occur in plant family members beyond perennial ryegrass and tall fescue and identifies a potential route for manipulating PA levels.

Indexed as

Alkyl and Aryl TransferasesLoliumPlant BreedingPyrrolizidine AlkaloidsAlkyl and Aryl Transferaseshomospermidine synthetasePyrrolizidine AlkaloidsAssociation mappingDeoxyhypusine synthaseHomospermidine synthaseLolium perenne L.Pyrrolizidine alkaloidsThesinine-rhamnoside

Identifiers

PMID29625552
PMCPMC5889531
OpenAlexW2799580581

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.