Evidence map›Paper›PMID 29625550›Full record

ArticleBMC genomics2018

Classification and phylogenetic analyses of the Arabidopsis and tomato G-type lectin receptor kinases.

Marcella A Teixeira, Alex Rajewski, Jiangman He, Olenka G Castaneda, Amy Litt, Isgouhi Kaloshian

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
12.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 43 citations in OpenAlex.

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  20. Frontiers in plant science · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Marcella A TeixeiraDepartment of Nematology, University of California, Riverside, California, USA.
Alex RajewskiDepartment of Botany and Plant Sciences, University of California, Riverside, California, USA.
Jiangman HeDepartment of Nematology, University of California, Riverside, California, USA.
Olenka G CastanedaChaffey College, Rancho Cucamonga, California, USA.
Amy LittDepartment of Botany and Plant Sciences, University of California, Riverside, California, USA.
Isgouhi KaloshianDepartment of Nematology, University of California, Riverside, California, USA. isgouhi.kaloshian@ucr.edu.ORCID http://orcid.org/0000-0002-9873-2810
University of California, Riverside · USChaffey College · US

Funding

National Science Foundation (US) 1461297
6 · The paper itself

Abstract

backgroundPathogen perception by plants is mediated by plasma membrane-localized immune receptors that have varied extracellular domains. Lectin receptor kinases (LecRKs) are among these receptors and are subdivided into 3 classes, C-type LecRKs (C-LecRKs), L-type LecRKs (L-LecRKs) and G-type LecRKs (G-LecRKs). While C-LecRKs are represented by one or two members in all plant species investigated and have unknown functions, L-LecRKs have been characterized in a few plant species and have been shown to play roles in plant defense against pathogens. Whereas Arabidopsis G-LecRKs have been characterized, this family of LecRKs has not been studied in tomato.

resultsThis investigation updates the current characterization of Arabidopsis G-LecRKs and characterizes the tomato G-LecRKs, using LecRKs from the monocot rice and the basal eudicot columbine to establish a basis for comparisons between the two core eudicots. Additionally, revisiting parameters established for Arabidopsis nomenclature for LecRKs is suggested for both Arabidopsis and tomato. Moreover, using phylogenetic analysis, we show the relationship among and between members of G-LecRKs from all three eudicot plant species. Furthermore, investigating presence of motifs in G-LecRKs we identified conserved motifs among members of G-LecRKs in tomato and Arabidopsis, with five present in at least 30 of the 38 Arabidopsis members and in at least 45 of the 73 tomato members.

conclusionsThis work characterized tomato G-LecRKs and added members to the currently characterized Arabidopsis G-LecRKs. Additionally, protein sequence analysis showed an expansion of this family in tomato as compared to Arabidopsis, and the existence of conserved common motifs in the two plant species as well as conserved species-specific motifs.

Indexed as

Amino Acid MotifsAquilegiaArabidopsisArabidopsis ProteinsCatalytic DomainChromosome MappingMultigene FamilyOryzaPhylogenyPlant ProteinsProtein KinasesReceptors, Cell SurfaceSolanum lycopersicumTerminology as TopicArabidopsis ProteinsPlant ProteinsProtein KinasesReceptors, Cell SurfaceAquilegia coeruleaArabidopsis thalianaColumbineG-LecRKsLectin receptorPhylogenetic analysisReceptor kinaseSolanum lycopersicumTomato

Identifiers

PMID29625550
PMCPMC5889549
OpenAlexW2804364832

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.