Evidence map›Paper›PMID 29623260›Full record

ArticleFrontiers in cellular and infection microbiology2018

Population Genomics of

Matthias Wittwer, Ekkehard Altpeter, Paola Pilo, Sebastian M Gygli, Christian Beuret, Frederic Foucault, Rahel Ackermann-Gäumann, Urs Karrer, Daniela Jacob, Roland Grunow and 1 more

Abstract read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Functional characterization ofFrontiers in cellular and infection microbiology · 2024
    Article
  5. Article
  6. Article
  7. Phylogeography ofFrontiers in microbiology · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Detection and Genotyping ofComputational and mathematical methods in medicine · 2021
    Article
  13. Genotyping ofMicroorganisms · 2020
    Article
  14. Genetic Traces of theMicroorganisms · 2020
    Article
  15. Article
  16. Review
  17. Microorganisms · 2020
    Review
  18. Article
  19. Phylogeography and Genetic Diversity ofFrontiers in microbiology · 2020
    Article
  20. Phylogeographic Distribution of Human and HareFrontiers in cellular and infection microbiology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Matthias WittwerSpiez Laboratory, Federal Office for Civil Protection, Spiez, Switzerland.
Ekkehard AltpeterSwiss Federal Office of Public Health, Bern, Switzerland.
Paola PiloDepartment of Infectious Diseases and Pathobiology, Institute of Veterinary Bacteriology, University of Berne, Berne, Switzerland.
Sebastian M GygliSwiss Tropical and Public Health Institute, Basel, Switzerland.
Christian BeuretSpiez Laboratory, Federal Office for Civil Protection, Spiez, Switzerland.
Frederic FoucaultMabritec AG, Riehen, Switzerland.
Rahel Ackermann-GäumannSpiez Laboratory, Federal Office for Civil Protection, Spiez, Switzerland.
Urs KarrerUniversity of Basel, Basel, Switzerland.
Daniela JacobZBS 2, Center for Biological Threats and Special Pathogens, Robert Koch Institute, Berlin, Germany.
Roland GrunowZBS 2, Center for Biological Threats and Special Pathogens, Robert Koch Institute, Berlin, Germany.
Nadia SchürchSpiez Laboratory, Federal Office for Civil Protection, Spiez, Switzerland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Whole genome sequencing (WGS) methods provide new possibilities in the field of molecular epidemiology. This is particularly true for monomorphic organisms where the discriminatory power of traditional methods (e.g., restriction enzyme length polymorphism typing, multi locus sequence typing etc.) is inadequate to elucidate complex disease transmission patterns, as well as resolving the phylogeny at high resolution on a micro-geographic scale. In this study, we present insights into the population structure of

Indexed as

AdolescentAdultAgedAged, 80 and overAnimalsArachnid VectorsChildFemaleFrancisella tularensisGenetic VariationGenome, BacterialGenomicsHaplorhiniHaresHumansIxodescanSNPsecologyepidemiology of infectious diseasesFrancisella tularensis subsp. holarcticaphylogenomicstickstularemiawhole genome sequencing (WGS)

Identifiers

PMID29623260
PMCPMC5875085

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.