Evidence map›Paper›PMID 29622678›Full record

ArticleThe Journal of biological chemistry2018

Calcium-induced structural rearrangements release autoinhibition in the Rap-GEF CalDAG-GEFI.

Aaron A Cook, Wei Deng, Jinqi Ren, Renhao Li, John Sondek, Wolfgang Bergmeier

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Extracellular histones promote TWIK2-dependent potassium efflux and associated NLRP3 activation in alveolar macrophages during sepsis-induced lung injury.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2024
    Article
  3. Article
  4. The Role of RASGRP2 in Vascular Endothelial Cells-A Mini Review.International journal of molecular sciences · 2021
    Review
  5. Heterogeneity of Integrin αInternational journal of molecular sciences · 2020
    Article
  6. Article
  7. Article
  8. Integration of Rap1 and Calcium Signaling.International journal of molecular sciences · 2020
    Review
  9. Review
  10. Frontiers in immunology · 2020
    Review
  11. Article
  12. Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Aaron A CookFrom the Departments of Biochemistry and Biophysics and.
Wei Dengthe Aflac Cancer and Blood Disorders Center, Department of Pediatrics, Emory University School of Medicine, Atlanta, Georgia 30322, and.
Jinqi RenPharmacology and.ORCID 0000-0001-7461-0491
Renhao Lithe Aflac Cancer and Blood Disorders Center, Department of Pediatrics, Emory University School of Medicine, Atlanta, Georgia 30322, and.
John SondekFrom the Departments of Biochemistry and Biophysics and.
Wolfgang BergmeierFrom the Departments of Biochemistry and Biophysics and bergmeie@email.unc.edu.
University of North Carolina at Chapel Hill · USEmory University · US

Funding

Spatio-temporal dynamics of GEF-GTPase networksP01GM103723 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HAHN, KLAUS M. · 2013 to 2017
$5.5M
Tiam1, a prototypical Rho-family GEFR01GM062299 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SONDEK, JOHN E · 2001 to 2011
$2.3M
Rap1 signaling in platelet homeostasis and vascular hemostasisR01HL130404 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BERGMEIER, WOLFGANG · 2016 to 2018
$1.2M
Spatial regulation of platelet activation by Podoplanin-Clec2 signalingR01HL121650 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI BERGMEIER, WOLFGANG, KAHN, MARK L · 2014 to 2017
$1.2M
NHLBI NIH HHS R01 HL121650NHLBI NIH HHS R01 HL130404NIGMS NIH HHS P01 GM103723NIGMS NIH HHS R01 GM062299
6 · The paper itself

Abstract

Platelets are recruited to sites of vascular injury, where they are activated and aggregate to form a hemostatic plug. This process requires the activation of the small GTPase Rap1B by its cognate guanine nucleotide exchange factor CalDAG-GEFI. Studies on platelet function suggest that CalDAG-GEFI activity is regulated by changes in cytosolic calcium, but the exact molecular mechanism is poorly understood. Here we show that purified CalDAG-GEFI is autoinhibited and directly regulated by calcium. Substitutions of putative calcium-binding residues within the canonical EF hands of CalDAG-GEFI diminish its capacity to activate Rap1B. Structural differences between active (WT) and inactive (EF hand variant) CalDAG-GEFI protein were determined by hydrogen-deuterium exchange MS. The highest differential rates of deuterium uptake in WT over EF hand variant CalDAG-GEFI were observed in regions within the catalytic Cdc25 domain and a putative autoinhibitory linker connecting the Cdc25 and EF hand domains. Exchange activity in the EF hand variant was fully restored by an additional substitution, valine 406 to glutamate, which is thought to disrupt the interface between the autoinhibitory linker and the Cdc25 domain. Overall, our results suggest a model for how CalDAG-GEFI remains in an autoinhibited state when levels of cytosolic calcium in resting platelets are low. In response to cellular stimulation, calcium mobilization and binding to the EF hands causes conformational rearrangements within CalDAG-GEFI, including the autoinhibitory linker that frees the catalytic surface of CalDAG-GEFI to engage and activate Rap1B. The data from this study are the first evidence linking CalDAG-GEFI activity directly to calcium.

Indexed as

EF Hand MotifsPlatelet AggregationBlood PlateletsCalciumGuanine Nucleotide Exchange FactorsHumansModels, MolecularProtein Conformationrap GTP-Binding ProteinsSignal TransductionCalciumGuanine Nucleotide Exchange FactorsRAP1B protein, humanrap GTP-Binding ProteinsRASGRP2 protein, humanautoinhibitioncalciumconformational dynamicsEF handGTPaseguanine nucleotide exchange factor (GEF)plateletstructural model

Identifiers

PMID29622678
PMCPMC5986229
OpenAlexW2796021780

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.