Evidence map›Paper›PMID 29621294›Full record

ArticlePloS one2018

The redox-sensing protein Rex modulates ethanol production in Thermoanaerobacterium saccharolyticum.

Tianyong Zheng, Anthony A Lanahan, Lee R Lynd, Daniel G Olson

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

  1. Identification of electron transfer enzymes inJournal of bacteriology · 2025
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  2. The role of AdhE mutations inJournal of bacteriology · 2025
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  7. Conversion of phosphoenolpyruvate to pyruvate inMetabolic engineering communications · 2020
    Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Tianyong ZhengDepartment of Biological Sciences, Dartmouth College, Hanover, New Hampshire, United States of America.ORCID 0000-0001-6127-4492
Anthony A LanahanBioEnergy Science Center, Oak Ridge, Tennessee, United States of America.
Lee R LyndDepartment of Biological Sciences, Dartmouth College, Hanover, New Hampshire, United States of America.
Daniel G OlsonBioEnergy Science Center, Oak Ridge, Tennessee, United States of America.ORCID 0000-0001-5393-6302
Dartmouth College · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thermoanaerobacterium saccharolyticum is a thermophilic anaerobe that has been engineered to produce high amounts of ethanol, reaching ~90% theoretical yield at a titer of 70 g/L. Here we report the physiological changes that occur upon deleting the redox-sensing transcriptional regulator Rex in wild type T. saccharolyticum: a single deletion of rex resulted in a two-fold increase in ethanol yield (from 40% to 91% theoretical yield), but the resulting strains grew only about a third as fast as the wild type strain. Deletion of the rex gene also had the effect of increasing expression of alcohol dehydrogenase genes, adhE and adhA. After several serial transfers, the ethanol yield decreased from an average of 91% to 55%, and the growth rates had increased. We performed whole-genome resequencing to identify secondary mutations in the Δrex strains adapted for faster growth. In several cases, secondary mutations had appeared in the adhE gene. Furthermore, in these strains the NADH-linked alcohol dehydrogenase activity was greatly reduced. Complementation studies were done to reintroduce rex into the Δrex strains: reintroducing rex decreased ethanol yield to below wild type levels in the Δrex strain without adhE mutations, but did not change the ethanol yield in the Δrex strain where an adhE mutation occurred.

Indexed as

Adaptation, BiologicalAlcohol DehydrogenaseEthanolFermentationGene DeletionGene Expression Regulation, BacterialGene Products, rexGenetic Complementation TestMutationOxidation-ReductionThermoanaerobacteriumWhole Genome SequencingAlcohol DehydrogenaseEthanolGene Products, rex

Identifiers

PMID29621294
PMCPMC5886521
OpenAlexW2795941201

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.