Evidence map›Paper›PMID 29619777›Full record

ArticleThe FEBS journal2018

The solution structure of monomeric CCL5 in complex with a doubly sulfated N-terminal segment of CCR5.

Meital Abayev, João P G L M Rodrigues, Gautam Srivastava, Boris Arshava, Łukasz Jaremko, Mariusz Jaremko, Fred Naider, Michael Levitt, Jacob Anglister

Open access · bronzeAbstract read
In one paragraph

Article in The FEBS journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. The marriage of chemokines and galectins as functional heterodimers.Cellular and molecular life sciences : CMLS · 2021
    Review
  10. Biomolecular NMR assignments · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. The methylJournal of biomolecular NMR · 2020
    Article
  16. A Paradigm for Peptide Hormone-GPCR Analyses.Molecules (Basel, Switzerland) · 2020
    Review
  17. Comparative modeling and docking of chemokine-receptor interactions with Rosetta.Biochemical and biophysical research communications · 2020
    Article
  18. Semisynthesis of an evasin from tick saliva reveals a critical role of tyrosine sulfation for chemokine binding and inhibition.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  19. N-terminal Backbone Pairing Shifts in CCL5-International journal of molecular sciences · 2020
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Meital AbayevDepartment of Structural Biology, Weizmann Institute of Science, Rehovot, Israel.
João P G L M RodriguesDepartment of Structural Biology, Stanford University School of Medicine, CA, USA.
Gautam SrivastavaDepartment of Structural Biology, Weizmann Institute of Science, Rehovot, Israel.
Boris ArshavaDepartment of Chemistry and Macromolecular Assembly Institute, College of Staten Island of the City University of New York, Staten Island, NY, USA.
Łukasz JaremkoDepartment of NMR-based Structural Biology, Max Planck Institute for Biophysical Chemistry, Gottingen, Germany.
Mariusz JaremkoDepartment of NMR-based Structural Biology, Max Planck Institute for Biophysical Chemistry, Gottingen, Germany.
Fred NaiderDepartment of Chemistry and Macromolecular Assembly Institute, College of Staten Island of the City University of New York, Staten Island, NY, USA.
Michael LevittDepartment of Structural Biology, Stanford University School of Medicine, CA, USA.
Jacob AnglisterDepartment of Structural Biology, Weizmann Institute of Science, Rehovot, Israel.
Weizmann Institute of Science · ILMax Planck Institute for Biophysical Chemistry · DEStanford University · USThe Graduate Center, CUNY · US

Funding

Emergent Properties of Complex Systems: From Atoms to Macromolecules; from Humans to SocietiesR35GM122543 · NIGMS · STANFORD UNIVERSITY · PI MICHAEL LEVITT · 2017 to 2026
$5.1M
NIGMS NIH HHS R35 GM122543
6 · The paper itself

Abstract

The inflammatory chemokine CCL5, which binds the chemokine receptor CCR5 in a two-step mechanism so as to activate signaling pathways in hematopoetic cells, plays an important role in immune surveillance, inflammation, and development as well as in several immune system pathologies. The recently published crystal structure of CCR5 bound to a high-affinity variant of CCL5 lacks the N-terminal segment of the receptor that is post-translationally sulfated and is known to be important for high-affinity binding. Here, we report the NMR solution structure of monomeric CCL5 bound to a synthetic doubly sulfated peptide corresponding to the missing first 27 residues of CCR5. Our structures show that two sulfated tyrosine residues, sY10 and sY14, as well as the unsulfated Y15 form a network of strong interactions with a groove on a surface of CCL5 that is formed from evolutionarily conserved basic and hydrophobic amino acids. We then use our NMR structures, in combination with available crystal data, to create an atomic model of full-length wild-type CCR5:CCL5. Our findings reveal the structural determinants involved in the recognition of CCL5 by the CCR5 N terminus. These findings, together with existing structural data, provide a complete structural framework with which to understand the specificity of receptor:chemokine interactions. DATABASE: Structural data are available in the PDB under the accession number 6FGP.

Indexed as

Protein ConformationAmino Acid SequenceBinding SitesChemokine CCL5Crystallography, X-RayHumansHydrophobic and Hydrophilic InteractionsNuclear Magnetic Resonance, BiomolecularProtein BindingReceptors, CCR5CCL5 protein, humanCCR5 protein, humanChemokine CCL5Receptors, CCR5chemokine receptorschemokinesintermolecular interactionsNMRprotein complexesproteinssulfated tyrosineTRNOE

Identifiers

PMID29619777
PMCPMC6433596
OpenAlexW2795708515

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.