Evidence map›Paper›PMID 29619193›Full record

ArticleChemical science2017

Sensing iron availability

Ma Teresa Pellicer Martinez, Ana Bermejo Martinez, Jason C Crack, John D Holmes, Dimitri A Svistunenko, Andrew W B Johnston, Myles R Cheesman, Jonathan D Todd, Nick E Le Brun

Open access · diamondAbstract read
In one paragraph

Article in Chemical science, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Fe-S cluster homeostasis and beyond: The multifaceted roles of IscR.Biochimica et biophysica acta. Molecular cell research · 2024
    Review
  9. Article
  10. Article
  11. Functional Characterization of the CoApplied and environmental microbiology · 2023
    Article
  12. Transcriptomic response ofFrontiers in microbiology · 2023
    Article
  13. Article
  14. Article
  15. mBio · 2021
    Article
  16. Native Mass Spectrometry of Iron-Sulfur Proteins.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  17. Bacterial iron detoxification at the molecular level.The Journal of biological chemistry · 2020
    Review
  18. Article
  19. Interaction of theThe Journal of biological chemistry · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 3 countries.

Ma Teresa Pellicer MartinezCentre for Molecular and Structural Biochemistry , School of Chemistry , University of East Anglia , Norwich Research Park , Norwich , NR4 7TJ , UK . Email: n.le-brun@uea.ac.uk ; ; Tel: +44 1603 592699.
Ana Bermejo MartinezSchool of Biological Sciences , University of East Anglia , Norwich Research Park , Norwich , NR4 7TJ , UK.
Jason C CrackCentre for Molecular and Structural Biochemistry , School of Chemistry , University of East Anglia , Norwich Research Park , Norwich , NR4 7TJ , UK . Email: n.le-brun@uea.ac.uk ; ; Tel: +44 1603 592699.
John D HolmesCentre for Molecular and Structural Biochemistry , School of Chemistry , University of East Anglia , Norwich Research Park , Norwich , NR4 7TJ , UK . Email: n.le-brun@uea.ac.uk ; ; Tel: +44 1603 592699.
Dimitri A SvistunenkoSchool of Biological Sciences , University of Essex , Wivenhoe Park , Colchester CO4 3SQ , UK.ORCID 0000-0001-8060-2738
Andrew W B JohnstonSchool of Biological Sciences , University of East Anglia , Norwich Research Park , Norwich , NR4 7TJ , UK.
Myles R CheesmanCentre for Molecular and Structural Biochemistry , School of Chemistry , University of East Anglia , Norwich Research Park , Norwich , NR4 7TJ , UK . Email: n.le-brun@uea.ac.uk ; ; Tel: +44 1603 592699.
Jonathan D ToddSchool of Biological Sciences , University of East Anglia , Norwich Research Park , Norwich , NR4 7TJ , UK.ORCID 0000-0003-0777-9312
Nick E Le BrunCentre for Molecular and Structural Biochemistry , School of Chemistry , University of East Anglia , Norwich Research Park , Norwich , NR4 7TJ , UK . Email: n.le-brun@uea.ac.uk ; ; Tel: +44 1603 592699.ORCID 0000-0001-9780-4061
University of East Anglia · GBUniversity of Essex · GB

Funding

Biotechnology and Biological Sciences Research Council BB/E003400/1
6 · The paper itself

Abstract

Rhizobial iron regulator A (RirA) is a global regulator of iron homeostasis in many nitrogen-fixing Rhizobia and related species of α-proteobacteria. It belongs to the widespread Rrf2 super-family of transcriptional regulators and features three conserved Cys residues that characterise the binding of an iron-sulfur cluster in other Rrf2 family regulators. Here we report biophysical studies demonstrating that RirA contains a [4Fe-4S] cluster, and that this form of the protein binds RirA-regulated DNA, consistent with its function as a repressor of expression of many genes involved in iron uptake. Under low iron conditions, [4Fe-4S] RirA undergoes a cluster conversion reaction resulting in a [2Fe-2S] form, which exhibits much lower affinity for DNA. Under prolonged low iron conditions, the [2Fe-2S] cluster degrades to apo-RirA, which does not bind DNA and can no longer function as a repressor of the cell's iron-uptake machinery. [4Fe-4S] RirA was also found to be sensitive to O

Identifiers

PMID29619193
PMCPMC5863699
OpenAlexW2765402344

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.