Evidence map›Paper›PMID 29618744›Full record

ArticleScientific reports2018

Network approach of the conformational change of c-Src, a tyrosine kinase, by molecular dynamics simulation.

Hyun Jung Yoon, Sungmin Lee, Sun Joo Park, Sangwook Wu

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Hyun Jung YoonDepartment of Physics, Pukyong National University, Busan, 48513, Republic of Korea.
Sungmin LeeDepartment of Energy Science, Sungkyunkwan University, Suwon, 16419, Republic of Korea.
Sun Joo ParkDepartment of Chemistry, Pukyong National University, Busan, 48513, Republic of Korea. parksj@pknu.ac.kr.
Sangwook WuDepartment of Physics, Pukyong National University, Busan, 48513, Republic of Korea. sangwoow@pknu.ac.kr.
Pukyong National University · KRSungkyunkwan University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Non-receptor tyrosine kinase c-Src plays a critical role in numerous cellular signalling pathways. Activation of c-Src from its inactive to the active state involves large-scale conformational changes, and is controlled by the phosphorylation state of two major phosphorylation sites, Tyr416 and Tyr527. A detailed mechanism for the entire conformational transition of c-Src via phosphorylation control of Tyr416 and Tyr527 is still elusive. In this study, we investigated the inactive-to-active conformational change of c-Src by targeted molecular dynamics simulation. Based on the simulation, we proposed a dynamical scenario for the activation process of c-Src. A detailed study of the conformational transition pathway based on network analysis suggests that Lys321 plays a key role in the c-Src activation process.

Indexed as

Molecular Dynamics SimulationMutationProtein ConformationAmino AcidsCSK Tyrosine-Protein KinaseHumansPhosphorylationsrc-Family KinasesTyrosineAmino AcidsCSK protein, humanCSK Tyrosine-Protein Kinasesrc-Family KinasesTyrosine

Identifiers

PMID29618744
PMCPMC5884825
OpenAlexW2806970630

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.