Evidence map›Paper›PMID 29618374›Full record

ArticleEpigenetics & chromatin2018

Transient reduction of DNA methylation at the onset of meiosis in male mice.

Valeriya Gaysinskaya, Brendan F Miller, Chiara De Luca, Godfried W van der Heijden, Kasper D Hansen, Alex Bortvin

Open access · goldAbstract read
In one paragraph

Article in Epigenetics & chromatin, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 75 citations in OpenAlex.

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  11. Heterochromatin in plant meiosis.Nucleus (Austin, Tex.) · 2024
    Review
  12. Article
  13. Article
  14. Genome-wide DNA methylation changes in human spermatogenesis.American journal of human genetics · 2024
    Article
  15. Article
  16. Article
  17. Article
  18. Ectopic expression of meiotic cohesin generates chromosome instability in cancer cell line.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Valeriya GaysinskayaDepartment of Embryology, Carnegie Institution for Science, Baltimore, MD, USA.
Brendan F MillerDepartment of Biology, Johns Hopkins University, Baltimore, MD, USA.
Chiara De LucaDepartment of Embryology, Carnegie Institution for Science, Baltimore, MD, USA.
Godfried W van der HeijdenDepartment of Obstetrics and Gynaecology, Erasmus MC, University Medical Center, PO BOX 2040, 3000 CA, Rotterdam, The Netherlands.
Kasper D HansenDepartment of Biostatistics, Johns Hopkins University, Baltimore, MD, USA.
Alex BortvinDepartment of Embryology, Carnegie Institution for Science, Baltimore, MD, USA. bortvin@carnegiescience.edu.ORCID 0000-0003-0987-1905
Carnegie Institution for Science · USJohns Hopkins University · USErasmus MC · NLNational Institutes of Health · US

Funding

CELLULAR AND MOLECULAR BIOLOGYT32GM007231 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI VAN DOREN, MARK B · 1985 to 2020
$18.4M
NIGMS NIH HHS T32 GM007231
6 · The paper itself

Abstract

backgroundMeiosis is a specialized germ cell cycle that generates haploid gametes. In the initial stage of meiosis, meiotic prophase I (MPI), homologous chromosomes pair and recombine. Extensive changes in chromatin in MPI raise an important question concerning the contribution of epigenetic mechanisms such as DNA methylation to meiosis. Interestingly, previous studies concluded that in male mice, genome-wide DNA methylation patters are set in place prior to meiosis and remain constant subsequently. However, no prior studies examined DNA methylation during MPI in a systematic manner necessitating its further investigation.

resultsIn this study, we used genome-wide bisulfite sequencing to determine DNA methylation of adult mouse spermatocytes at all MPI substages, spermatogonia and haploid sperm. This analysis uncovered transient reduction of DNA methylation (TRDM) of spermatocyte genomes. The genome-wide scope of TRDM, its onset in the meiotic S phase and presence of hemimethylated DNA in MPI are all consistent with a DNA replication-dependent DNA demethylation. Following DNA replication, spermatocytes regain DNA methylation gradually but unevenly, suggesting that key MPI events occur in the context of hemimethylated genome. TRDM also uncovers the prior deficit of DNA methylation of LINE-1 retrotransposons in spermatogonia resulting in their full demethylation during TRDM and likely contributing to the observed mRNA and protein expression of some LINE-1 elements in early MPI.

conclusionsOur results suggest that contrary to the prevailing view, chromosomes exhibit dynamic changes in DNA methylation in MPI. We propose that TRDM facilitates meiotic prophase processes and gamete quality control.

Indexed as

DNA MethylationMeiotic Prophase ISpermatogenesisAnimalsEpigenesis, GeneticLong Interspersed Nucleotide ElementsMaleMiceMolecular Sequence AnnotationSpermatocytesSpermatogoniaSpermatozoaTestisWhole Genome SequencingDNA methylationHemimethylationLINE-1MeiosisMeiotic prophaseMouseRetrotransposonSpermatogenesis

Identifiers

PMID29618374
PMCPMC5883305
OpenAlexW2952778924

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.