Evidence map›Paper›PMID 29617986›Full record

ArticleFEMS microbiology letters2018

Fermentation products in the cystic fibrosis airways induce aggregation and dormancy-associated expression profiles in a CF clinical isolate of Pseudomonas aeruginosa.

Joann Phan, Tara Gallagher, Andrew Oliver, Whitney E England, Katrine Whiteson

Open access · hybridAbstract read
In one paragraph

Article in FEMS microbiology letters, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Review
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  11. Multi-Omics Study of Keystone Species in a Cystic Fibrosis Microbiome.International journal of molecular sciences · 2021
    Article
  12. Article
  13. Review
  14. Review
  15. Review
  16. Thriving Under Stress:Frontiers in cellular and infection microbiology · 2020
    Article
  17. Microbiology of Cystic Fibrosis Airway Disease.Seminars in respiratory and critical care medicine · 2019
    Review
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Joann PhanDepartment of Molecular Biology and Biochemistry, University of California at Irvine, 3315 McGaugh Hall, UCI, Irvine, CA 92697, USA.
Tara GallagherDepartment of Molecular Biology and Biochemistry, University of California at Irvine, 3315 McGaugh Hall, UCI, Irvine, CA 92697, USA.
Andrew OliverDepartment of Molecular Biology and Biochemistry, University of California at Irvine, 3315 McGaugh Hall, UCI, Irvine, CA 92697, USA.
Whitney E EnglandDepartment of Molecular Biology and Biochemistry, University of California at Irvine, 3315 McGaugh Hall, UCI, Irvine, CA 92697, USA.
Katrine WhitesonDepartment of Molecular Biology and Biochemistry, University of California at Irvine, 3315 McGaugh Hall, UCI, Irvine, CA 92697, USA.
University of California, Irvine · US

Funding

West Coast Central Comprehensive Metabolomics Resource Core (WC3MRC)U24DK097154 · NIDDK · UNIVERSITY OF CALIFORNIA AT DAVIS · PI FIEHN, OLIVER · 2012 to 2017
$9.9M
Dynamics of airway microbiota at pulmonary exacerbation in cystic fibrosisR01HL136647 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LIPUMA, JOHN J · 2017 to 2020
$1.3M
Omics of pulmonary exacerbations in cystic fibrosisR56HL126754 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LIPUMA, JOHN J · 2016 to 2016
$388k
NHLBI NIH HHS R01 HL136647NHLBI NIH HHS R56 HL126754NIDDK NIH HHS U24 DK097154
6 · The paper itself

Abstract

Pseudomonas aeruginosa is a well-known dominant opportunistic pathogen in cystic fibrosis (CF) with a wide range of metabolic capacities. However, P. aeruginosa does not colonize the airways alone, and benefits from the metabolic products of neighboring cells-especially volatile molecules that can travel between different parts of the airways easily. Here, we present a study that investigates the metabolic, gene expression profiles and phenotypic responses of a P. aeruginosa clinical isolate to fermentation products lactic acid and 2,3-butanediol, metabolites that are produced by facultative anaerobic members of the CF polymicrobial community and potential biomarkers of disease progression. Although previous studies have successfully investigated the metabolic and transcriptional profiles of P. aeruginosa, most have used common lab reference strains that may differ in important ways from clinical isolates. Using transcriptomics and metabolomics with gas chromatography time of flight mass spectrometry, we observe that fermentation products induce pyocyanin production along with the expression of genes involved in P. aeruginosa amino acid utilization, dormancy and aggregative or biofilm modes of growth. These findings have important implications for how interactions within the diverse CF microbial community influence microbial physiology, with potential clinical consequences.

Indexed as

BiofilmsBacterial ProteinsButylene GlycolsCystic FibrosisFermentationHumansLactic AcidLungPhylogenyPseudomonas aeruginosaPseudomonas InfectionsPyocyanineSputum2,3-butylene glycolBacterial ProteinsButylene GlycolsLactic AcidPyocyanine

Identifiers

PMID29617986
PMCPMC5928460
OpenAlexW2795109103

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.