Evidence map›Paper›PMID 29616503›Full record

ArticleJournal of Zhejiang University. Science. B

A novel endogenous badnavirus exists in Alhagi sparsifolia.

Yong-Chao Li, Jian-Guo Shen, Guo-Huan Zhao, Qin Yao, Wei-Min Li

Open access · bronzeAbstract read
In one paragraph

Article in Journal of Zhejiang University. Science. B. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.7field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 6 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Yong-Chao LiInstitute of Life Sciences, Jiangsu University, Zhenjiang 212013, China.
Jian-Guo ShenInspection & Quarantine Technology Center, Fujian Entry-Exit Inspection and Quarantine Bureau, Fuzhou 350003, China.
Guo-Huan ZhaoKey Laboratory of Agro-Biodiversity and Pest Management of Education Ministry of China, Yunnan Agricultural University, Kunming 650201, China.
Qin YaoInstitute of Life Sciences, Jiangsu University, Zhenjiang 212013, China.
Wei-Min LiBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Jiangsu University · CNChinese Academy of Agricultural Sciences · CNFujian Entry - Exit Inspection and Quarantine Bureau · CNYunnan Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We report the recovery of a 7068-nt viral sequence from the "viral fossils" embedded in the genome of Alhagi sparsifolia, a typical desert plant. Although the full viral genome remains to be completed, the putative genome structure, the deduced amino acids and phylogenetic analysis unambiguously demonstrate that this viral sequence represents a novel species of the genus Badnavirus. The putative virus is tentatively termed Alhagi bacilliform virus (ABV). Southern blotting and inverse polymerase chain reaction (PCR) data indicate that the ABV-related sequence is integrated into the A. sparsifolia genome, and probably does not give rise to functional episomal virus. Molecular evidence that the ABV sequence exists widely in A. sparsifolia is also presented. To our knowledge, this is the first endogenous badnavirus identified from plants in the Gobi desert, and may provide new clues on the evolution, geographical distribution as well as the host range of the badnaviruses.

Indexed as

Genome, ViralBadnavirusBiological EvolutionDesert ClimateFabaceaeGenes, PlantGenetic VariationGeographyOpen Reading FramesPhylogenyPlant DiseasesPlasmidsSequence Analysis, RNABadnavirus; Endogenous Alhagi bacilliform virus; Nuclear integration

Identifiers

PMID29616503
PMCPMC5964343
OpenAlexW2799916157

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.