Evidence map›Paper›PMID 29615825›Full record

ArticleScientific reports2018

Epigenetic alterations to Polycomb targets precede malignant transition in a mouse model of breast cancer.

Ying Cai, Jhih-Rong Lin, Quanwei Zhang, Kelly O'Brien, Cristina Montagna, Zhengdong D Zhang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
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  9. Article
  10. Polycomb repressive 2 complex-Molecular mechanisms of function.Protein science : a publication of the Protein Society · 2019
    Review
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Ying CaiDepartment of Genetics, Albert Einstein College of Medicine, Bronx, New York, USA.
Jhih-Rong LinDepartment of Genetics, Albert Einstein College of Medicine, Bronx, New York, USA.
Quanwei ZhangDepartment of Genetics, Albert Einstein College of Medicine, Bronx, New York, USA.
Kelly O'BrienDepartment of Genetics, Albert Einstein College of Medicine, Bronx, New York, USA.
Cristina MontagnaDepartment of Genetics, Albert Einstein College of Medicine, Bronx, New York, USA.
Zhengdong D ZhangDepartment of Genetics, Albert Einstein College of Medicine, Bronx, New York, USA. zhengdong.zhang@einstein.yu.edu.
Albert Einstein College of Medicine · US

Funding

WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI STEVEN C. ALMO · 1985 to 2026
$111.2M
Interpreting human enhancer variants with a network-regularized composite modelR01HG008153 · NHGRI · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI ZHANG, ZHENGDONG · 2016 to 2018
$3.1M
Gene regulation in metastasis and new methods to analyze its microarray profilesR00LM009770 · NLM · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI ZHANG, ZHENGDONG · 2010 to 2012
$727k
NCI NIH HHS P30 CA013330NHGRI NIH HHS R01 HG008153NLM NIH HHS R00 LM009770
6 · The paper itself

Abstract

Malignant breast cancer remains a major health threat to women of all ages worldwide and epigenetic variations on DNA methylation have been widely reported in cancers of different types. We profiled DNA methylation with ERRBS (Enhanced Reduced Representation Bisulfite Sequencing) across four main stages of tumor progression in the MMTV-PyMT mouse model (hyperplasia, adenoma/mammary intraepithelial neoplasia, early carcinoma and late carcinoma), during which malignant transition occurs. We identified a large number of differentially methylated cytosines (DMCs) in tumors relative to age-matched normal mammary glands from FVB mice. Despite similarities, the methylation differences of the premalignant stages were distinct from the malignant ones. Many differentially methylated loci were preserved from the first to the last stage throughout tumor progression. Genes affected by methylation gains were enriched in Polycomb repressive complex 2 (PRC2) targets, which may present biomarkers for early diagnosis and targets for treatment.

Indexed as

Disease Models, AnimalEpigenesis, GeneticGene Expression Regulation, NeoplasticGene Regulatory NetworksAnimalsBiomarkers, TumorBreast NeoplasmsDNA MethylationFemaleGene Expression ProfilingHumansMicePolycomb-Group ProteinsPrecancerous ConditionsPrognosisBiomarkers, TumorPolycomb-Group Proteins

Identifiers

PMID29615825
PMCPMC5882905
OpenAlexW2806075801

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.