Evidence map›Paper›PMID 29615759›Full record

ArticleScientific reports2018

Directed -in vitro- evolution of Precambrian and extant Rubiscos.

Bernardo J Gomez-Fernandez, Eva Garcia-Ruiz, Javier Martin-Diaz, Patricia Gomez de Santos, Paloma Santos-Moriano, Francisco J Plou, Antonio Ballesteros, Monica Garcia, Marisa Rodriguez, Valeria A Risso and 3 more

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Rubisco is slow across the tree of life.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. In vivo directed evolution of an ultrafast Rubisco from a semianaerobic environment imparts oxygen resistance.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Bernardo J Gomez-FernandezDepartment of Biocatalysis, Institute of Catalysis, CSIC, Cantoblanco, 28049, Madrid, Spain.
Eva Garcia-RuizDepartment of Biocatalysis, Institute of Catalysis, CSIC, Cantoblanco, 28049, Madrid, Spain.
Javier Martin-DiazDepartment of Biocatalysis, Institute of Catalysis, CSIC, Cantoblanco, 28049, Madrid, Spain.
Patricia Gomez de SantosDepartment of Biocatalysis, Institute of Catalysis, CSIC, Cantoblanco, 28049, Madrid, Spain.
Paloma Santos-MorianoDepartment of Biocatalysis, Institute of Catalysis, CSIC, Cantoblanco, 28049, Madrid, Spain.
Francisco J PlouDepartment of Biocatalysis, Institute of Catalysis, CSIC, Cantoblanco, 28049, Madrid, Spain.
Antonio BallesterosDepartment of Biocatalysis, Institute of Catalysis, CSIC, Cantoblanco, 28049, Madrid, Spain.
Monica GarciaDivisión de Tecnología Química y Nuevas Energías, Centro del Tecnología Química, Repsol S.A, 28935, Móstoles, Spain.
Marisa RodriguezDivisión de Tecnología Química y Nuevas Energías, Centro del Tecnología Química, Repsol S.A, 28935, Móstoles, Spain.
Valeria A RissoFacultad de Ciencias, Departamento de Química Física, Universidad de Granada, 18071, Granada, Spain.
Jose M Sanchez-RuizFacultad de Ciencias, Departamento de Química Física, Universidad de Granada, 18071, Granada, Spain.
Spencer M WhitneyResearch School of Biology, The Australian National University, Acton, Australian Capital Territory, 2601, Australia.
Miguel AlcaldeDepartment of Biocatalysis, Institute of Catalysis, CSIC, Cantoblanco, 28049, Madrid, Spain. malcalde@icp.csic.es.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rubisco is an ancient, catalytically conserved yet slow enzyme, which plays a central role in the biosphere's carbon cycle. The design of Rubiscos to increase agricultural productivity has hitherto relied on the use of in vivo selection systems, precluding the exploration of biochemical traits that are not wired to cell survival. We present a directed -in vitro- evolution platform that extracts the enzyme from its biological context to provide a new avenue for Rubisco engineering. Precambrian and extant form II Rubiscos were subjected to an ensemble of directed evolution strategies aimed at improving thermostability. The most recent ancestor of proteobacteria -dating back 2.4 billion years- was uniquely tolerant to mutagenic loading. Adaptive evolution, focused evolution and genetic drift revealed a panel of thermostable mutants, some deviating from the characteristic trade-offs in CO

Indexed as

Directed Molecular EvolutionAmino Acid SequenceCarbon DioxideKineticsModels, MolecularPhylogenyProtein ConformationRhodospirillumRibulose-Bisphosphate CarboxylaseSequence HomologyCarbon DioxideRibulose-Bisphosphate Carboxylase

Identifiers

PMID29615759
PMCPMC5883036

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.