Evidence map›Paper›PMID 29615716›Full record

ArticleScientific reports2018

A multi-step transcriptional cascade underlies vascular regeneration in vivo.

Aditya S Shirali, Milagros C Romay, Austin I McDonald, Trent Su, Michelle E Steel, M Luisa Iruela-Arispe

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Aditya S ShiraliDepartment of Surgery, University of California at Los Angeles, Los Angeles, CA, 90095, USA.
Milagros C RomayDepartment of Molecular, Cell, and Developmental Biology, University of California at Los Angeles, Los Angeles, CA, 90095, USA.
Austin I McDonaldMolecular Biology Institute, University of California at Los Angeles, Los Angeles, CA, 90095, USA.
Trent SuDepartment of Biological Chemistry, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, CA, 90095, USA.
Michelle E SteelDepartment of Molecular, Cell, and Developmental Biology, University of California at Los Angeles, Los Angeles, CA, 90095, USA.
M Luisa Iruela-ArispeMolecular Biology Institute, University of California at Los Angeles, Los Angeles, CA, 90095, USA. arispe@mcdb.ucla.edu.
University of California, Los Angeles · USQB3 · US

Funding

UCLA-Caltech Medical Scientist Training ProgramT32GM008042 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI AJIJOLA, OLUJIMI A, DAWSON, DAVID WAYNE · 1985 to 2023
$29.9M
Vascular Biology Training GrantT32HL069766 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LUSIS, ALDONS JAKE · 2002 to 2022
$7.4M
Vascular Growth and RegenerationR35HL140014 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI IRUELA-ARISPE, M. LUISA · 2018 to 2024
$6.6M
NHLBI NIH HHS R35 HL140014NHLBI NIH HHS T32 HL069766
6 · The paper itself

Abstract

The molecular mechanisms underlying vascular regeneration and repair are largely unknown. To gain insight into this process, we developed a method of intima denudation, characterized the progression of endothelial healing, and performed transcriptome analysis over time. Next-generation RNA sequencing (RNAseq) provided a quantitative and unbiased gene expression profile during in vivo regeneration following denudation injury. Our data indicate that shortly after injury, cells immediately adjacent to the wound mount a robust and rapid response with upregulation of genes like Jun, Fos, Myc, as well as cell adhesion genes. This was quickly followed by a wave of proliferative genes. After completion of endothelial healing a vigorous array of extracellular matrix transcripts were upregulated. Gene ontology enrichment and protein network analysis were used to identify transcriptional profiles over time. Further data mining revealed four distinct stages of regeneration: shock, proliferation, acclimation, and maturation. The transcriptional signature of those stages provides insight into the regenerative machinery responsible for arterial repair under normal physiologic conditions.

Indexed as

Gene Expression ProfilingTranscription, GeneticAnimalsArteriesCell AdhesionCell CycleCell ProliferationEndothelium, VascularExtracellular MatrixHigh-Throughput Nucleotide SequencingMiceNeovascularization, PhysiologicRegenerationWound Healing

Identifiers

PMID29615716
PMCPMC5882937
OpenAlexW2805152796

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.