Evidence map›Paper›PMID 29615713›Full record

ArticleScientific reports2018

Targeted expression of step-function opsins in transgenic rats for optogenetic studies.

Hiroyuki Igarashi, Keiko Ikeda, Hiroshi Onimaru, Ryosuke Kaneko, Kyo Koizumi, Kaoru Beppu, Kayo Nishizawa, Yukari Takahashi, Fusao Kato, Ko Matsui and 5 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.2field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Application of Optogenetics for Muscle Cells and Stem Cells.Advances in experimental medicine and biology · 2021
    Article
  5. Article
  6. Article
  7. New era of optogenetics: from the central to peripheral nervous system.Critical reviews in biochemistry and molecular biology · 2020
    Review
  8. Article
  9. Article
  10. Ipsilateral-Dominant Control of Limb Movements in Rodent Posterior Parietal Cortex.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 1 country.

Hiroyuki IgarashiDepartment of Physiology and Pharmacology, Tohoku University Graduate school of Medicine, Sendai, Japan. hirobio@med.tohoku.ac.jp.
Keiko IkedaDepartment of Physiology, International University of Health and Welfare, Narita, Chiba, Japan.
Hiroshi OnimaruDepartment of Physiology, Showa University School of Medicine, Shinagawa, Tokyo, Japan.
Ryosuke KanekoDepartment of Genetic and Behavioural Neuroscience, Gunma University Graduate School of Medicine, Maebashi, Japan.
Kyo KoizumiDepartment of Developmental Biology and Neuroscience, Tohoku University Graduate School of Life Sciences, Sendai, Japan.
Kaoru BeppuDepartment of Super-network Brain Physiology, Tohoku University Graduate School of Life Sciences, Sendai, Japan.
Kayo NishizawaDepartment of Molecular Genetics, Institute of Biomedical Sciences, Fukushima Medical University School of Medicine, Fukushima, Japan.
Yukari TakahashiDepartment of Neuroscience, The Jikei University School of Medicine, Tokyo, Japan.
Fusao KatoDepartment of Neuroscience, The Jikei University School of Medicine, Tokyo, Japan.ORCID 0000-0003-0031-9946
Ko MatsuiDepartment of Super-network Brain Physiology, Tohoku University Graduate School of Life Sciences, Sendai, Japan.
Kazuto KobayashiDepartment of Molecular Genetics, Institute of Biomedical Sciences, Fukushima Medical University School of Medicine, Fukushima, Japan.
Yuchio YanagawaDepartment of Genetic and Behavioural Neuroscience, Gunma University Graduate School of Medicine, Maebashi, Japan.
Shin-Ichi MuramatsuDivision of Neurology, Jichi Medical School, Tochigi, Japan.ORCID 0000-0002-3185-7790
Toru IshizukaDepartment of Developmental Biology and Neuroscience, Tohoku University Graduate School of Life Sciences, Sendai, Japan.
Hiromu YawoDepartment of Physiology and Pharmacology, Tohoku University Graduate school of Medicine, Sendai, Japan. hiromu.yawo.c7@tohoku.ac.jp.
Tohoku University · JPFukushima Medical University · JPGunma University · JPJichi Medical University · JPJikei University School of Medicine · JPShowa University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rats are excellent animal models for experimental neuroscience. However, the application of optogenetics in rats has been hindered because of the limited number of established transgenic rat strains. To accomplish cell-type specific targeting of an optimized optogenetic molecular tool, we generated ROSA26/CAG-floxed STOP-ChRFR(C167A)-Venus BAC rats that conditionally express the step-function mutant channelrhodopsin ChRFR(C167A) under the control of extrinsic Cre recombinase. In primary cultured cortical neurons derived from this reporter rat, only Cre-positive cells expressing ChRFR(C167A) became bi-stable, that is, their excitability was enhanced by blue light and returned to the baseline by yellow~red light. In bigenic pups carrying the Phox2B-Cre driver, ChRFR(C167A) was specifically expressed in the rostral parafacial respiratory group (pFRG) in the medulla, where endogenous Phox2b immunoreactivity was detected. These neurons were sensitive to blue light with an increase in the firing frequency. Thus, this transgenic rat actuator/reporter system should facilitate optogenetic studies involving the effective in vivo manipulation of the activities of specific cell fractions using light of minimal intensity.

Indexed as

AnimalsGene ExpressionGenes, ReporterOpsinsOptogeneticsRatsRats, TransgenicOpsins

Identifiers

PMID29615713
PMCPMC5882906
OpenAlexW2795599123

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.