Evidence map›Paper›PMID 29615614›Full record

ArticleNature communications2018

Gon4l regulates notochord boundary formation and cell polarity underlying axis extension by repressing adhesion genes.

Margot L K Williams, Atsushi Sawada, Terin Budine, Chunyue Yin, Paul Gontarz, Lilianna Solnica-Krezel

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Margot L K WilliamsDepartment of Developmental Biology, Washington University School of Medicine, Saint Louis, MO, 63110, USA.
Atsushi SawadaDepartment of Developmental Biology, Washington University School of Medicine, Saint Louis, MO, 63110, USA.
Terin BudineDepartment of Developmental Biology, Washington University School of Medicine, Saint Louis, MO, 63110, USA.
Chunyue YinDepartment of Biological Sciences, Vanderbilt University, Nashville, TN, 37235, USA.
Paul GontarzDepartment of Developmental Biology, Washington University School of Medicine, Saint Louis, MO, 63110, USA.
Lilianna Solnica-KrezelDepartment of Developmental Biology, Washington University School of Medicine, Saint Louis, MO, 63110, USA. solnical@wustl.edu.
Vanderbilt University · USWashington University in St. Louis · US

Funding

Inductive and morphogenetic processes shaping the zebrafish embryonic axesR35GM118179 · NIGMS · WASHINGTON UNIVERSITY · PI LILIANNA SOLNICAKREZEL · 2016 to 2026
$7.4M
Regulation of mediolateral cell polarity by PCP and notochord boundary signalingF32GM113396 · NIGMS · WASHINGTON UNIVERSITY · PI WILLIAMS, MARGOT L.K. · 2015 to 2016
$109k
NIGMS NIH HHS F32 GM113396NIGMS NIH HHS R35 GM118179
6 · The paper itself

Abstract

Anteroposterior (AP) axis extension during gastrulation requires embryonic patterning and morphogenesis to be spatiotemporally coordinated, but the underlying genetic mechanisms remain poorly understood. Here we define a role for the conserved chromatin factor Gon4l, encoded by ugly duckling (udu), in coordinating tissue patterning and axis extension during zebrafish gastrulation through direct positive and negative regulation of gene expression. Although identified as a recessive enhancer of impaired axis extension in planar cell polarity (PCP) mutants, udu functions in a genetically independent, partially overlapping fashion with PCP signaling to regulate mediolateral cell polarity underlying axis extension in part by promoting notochord boundary formation. Gon4l limits expression of the cell-cell and cell-matrix adhesion molecules EpCAM and Integrinα3b, excesses of which perturb the notochord boundary via tension-dependent and -independent mechanisms, respectively. By promoting formation of this AP-aligned boundary and associated cell polarity, Gon4l cooperates with PCP signaling to coordinate morphogenesis along the AP embryonic axis.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsBody PatterningCell AdhesionCell CommunicationChromatinCrosses, GeneticErythroid-Specific DNA-Binding FactorsMembrane GlycoproteinsMutationNotochordSequence Analysis, RNASignal TransductionXenopusZebrafishZebrafish ProteinsChromatinEpCAM protein, zebrafishErythroid-Specific DNA-Binding FactorsGon4l protein, zebrafishMembrane GlycoproteinsZebrafish Proteins

Identifiers

PMID29615614
PMCPMC5882663
OpenAlexW2795484579

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.