Evidence map›Paper›PMID 29613829›Full record

ArticleEpigenetics2018

Novel imprinted single CpG sites found by global DNA methylation analysis in human parthenogenetic induced pluripotent stem cells.

Na Young Choi, Jin Seok Bang, Hye Jeong Lee, Yo Seph Park, Minseong Lee, Dahee Jeong, Kisung Ko, Dong Wook Han, Hyung-Min Chung, Gwang Jun Kim and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Epigenetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 32 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Na Young Choia Department of Stem Cell Biology, School of Medicine , Konkuk University , Seoul 05029 , Korea.
Jin Seok Banga Department of Stem Cell Biology, School of Medicine , Konkuk University , Seoul 05029 , Korea.
Hye Jeong Leea Department of Stem Cell Biology, School of Medicine , Konkuk University , Seoul 05029 , Korea.
Yo Seph Parka Department of Stem Cell Biology, School of Medicine , Konkuk University , Seoul 05029 , Korea.
Minseong Leea Department of Stem Cell Biology, School of Medicine , Konkuk University , Seoul 05029 , Korea.
Dahee Jeonga Department of Stem Cell Biology, School of Medicine , Konkuk University , Seoul 05029 , Korea.
Kisung Koc Department of Medicine, College of Medicine , Chung-Ang University , Seoul 06974 , Korea.
Dong Wook Hana Department of Stem Cell Biology, School of Medicine , Konkuk University , Seoul 05029 , Korea.
Hyung-Min Chunga Department of Stem Cell Biology, School of Medicine , Konkuk University , Seoul 05029 , Korea.
Gwang Jun Kime Department of Pediatrics, College of Medicine , Chung-Ang University , Seoul 06973 , Korea.
Seung-Hyuk Shimf Department of Obstetrics and Gynecology , School of Medicine, Konkuk University , Seoul 05030 , Korea.
Han Sung Hwangf Department of Obstetrics and Gynecology , School of Medicine, Konkuk University , Seoul 05030 , Korea.ORCID 0000-0003-0622-0701
Kinarm Koa Department of Stem Cell Biology, School of Medicine , Konkuk University , Seoul 05029 , Korea.
Konkuk University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genomic imprinting is the process of epigenetic modification whereby genes are expressed in a parent-of-origin dependent manner; it plays an important role in normal growth and development. Parthenogenetic embryos contain only the maternal genome. Parthenogenetic embryonic stem cells could be useful for studying imprinted genes. In humans, mature cystic ovarian teratomas originate from parthenogenetic activation of oocytes; they are composed of highly differentiated mature tissues containing all three germ layers. To establish human parthenogenetic induced pluripotent stem cell lines (PgHiPSCs), we generated parthenogenetic fibroblasts from ovarian teratoma tissues. We compared global DNA methylation status of PgHiPSCs with that of biparental human induced pluripotent stem cells by using Illumina Infinium HumanMethylation450 BeadChip array. This analysis identified novel single imprinted CpG sites. We further tested DNA methylation patterns of two of these sites using bisulfite sequencing and described novel candidate imprinted CpG sites. These results confirm that PgHiPSCs are a powerful tool for identifying imprinted genes and investigating their roles in human development and diseases.

Indexed as

DNA MethylationGenomic ImprintingCells, CulturedCpG IslandsFemaleGene Expression ProfilingGene Expression RegulationHumansInduced Pluripotent Stem CellsOligonucleotide Array Sequence AnalysisOvarian NeoplasmsParthenogenesisSequence Analysis, DNATeratomaDNA methylationgenome-wideIllumina HumanMethylation450, 450K arrayparthenogenetic imprintingParthenogenetic induced pluripotent stem cells

Identifiers

PMID29613829
PMCPMC6140819
OpenAlexW2796117629

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.