Evidence map›Paper›PMID 29611871›Full record

ArticleThe New phytologist2018

SIP1 participates in regulation of flowering time in rice by recruiting OsTrx1 to Ehd1.

Pengfei Jiang, Shiliang Wang, Han Zheng, Hao Li, Fei Zhang, Yanhua Su, Zuntao Xu, Haiyan Lin, Qian Qian, Yong Ding

Open access · hybridAbstract read
In one paragraph

Article in The New phytologist, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
9.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Plants (Basel, Switzerland) · 2025
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  12. Improving yield-related traits by editing the promoter of the heading date gene Ehd1 in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Pengfei JiangCAS Center for Excellence in Molecular Plant Sciences, School of Life Sciences, University of Science & Technology of China, Hefei, Anhui, 230027, China.
Shiliang WangCAS Center for Excellence in Molecular Plant Sciences, School of Life Sciences, University of Science & Technology of China, Hefei, Anhui, 230027, China.
Han ZhengCAS Center for Excellence in Molecular Plant Sciences, School of Life Sciences, University of Science & Technology of China, Hefei, Anhui, 230027, China.
Hao LiKey Laboratory of Rice Genetic Breeding of Anhui Province, Rice Research Institute, Anhui Academy of Agricultural Sciences, Hefei, 230031, China.
Fei ZhangCAS Center for Excellence in Molecular Plant Sciences, School of Life Sciences, University of Science & Technology of China, Hefei, Anhui, 230027, China.
Yanhua SuCAS Center for Excellence in Molecular Plant Sciences, School of Life Sciences, University of Science & Technology of China, Hefei, Anhui, 230027, China.
Zuntao XuCAS Center for Excellence in Molecular Plant Sciences, School of Life Sciences, University of Science & Technology of China, Hefei, Anhui, 230027, China.
Haiyan LinState Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310006, China.
Qian QianState Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310006, China.
Yong DingCAS Center for Excellence in Molecular Plant Sciences, School of Life Sciences, University of Science & Technology of China, Hefei, Anhui, 230027, China.
Center for Excellence in Molecular Plant Sciences · CNAnhui Agricultural University · CNChinese Academy of Agricultural Sciences · CNRice Research Institute · CNUniversity of Science and Technology of China · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Flowering time (heading date) in rice (Oryza sativa) is an important agronomic trait that determines yield. The levels of histone H3 lysine 4 trimethylation (H3K4me3) modulated by TRITHORAX-like proteins regulate gene transcription, flowering time and environmental stress responses. However, plant TRITHORAX-like proteins have no known DNA-binding domain, and therefore the mechanism that gives sequence specificity to these proteins remains unclear. Here, we show that the rice TRITHORAX-like protein OsTrx1 is recruited to its target, Early heading date 1 (Ehd1), by the C2H2 zinc finger protein SDG723/OsTrx1/OsSET33 Interaction Protein 1 (SIP1). SIP1 binds to the promoter of Ehd1 and interacts with OsTrx1. Mutations in SIP1 led to a late heading date under long-day and short-day conditions. Defects in OsTrx1 or SIP1 led to reduced H3K4me3 levels at Ehd1, thus reducing Ehd1 expression. Together, our results show that the transcription factor SIP1 interacts with OxTrx1, allowing OsTrx1 to specifically target Ehd1, altering H3K4me3 levels, increasing Ehd1 expression and thereby promoting flowering.

Indexed as

FlowersGene Expression Regulation, PlantHistonesMutationOryzaPhotoperiodPlant ProteinsPromoter Regions, Genetichistone H3 trimethyl Lys4HistonesPlant ProteinsC2H2 zinc finger protein SIP1flowering timeH3K4me3OsTrx1rice

Identifiers

PMID29611871
PMCPMC6001661
OpenAlexW2796393590

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.