Evidence map›Paper›PMID 29610464›Full record

ArticleNature chemistry2018

Single helically folded aromatic oligoamides that mimic the charge surface of double-stranded B-DNA.

Krzysztof Ziach, Céline Chollet, Vincent Parissi, Panchami Prabhakaran, Mathieu Marchivie, Valentina Corvaglia, Partha Pratim Bose, Katta Laxmi-Reddy, Frédéric Godde, Jean-Marie Schmitter and 3 more

Abstract read
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In one paragraph

Article in Nature chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
  2. Mechanisms of Chiral Induction to Foldamer Backbones.Chemistry (Weinheim an der Bergstrasse, Germany) · 2025
    Review
  3. Interfacing B-DNA and DNA Mimic Foldamers.Angewandte Chemie (International ed. in English) · 2025
    Article
  4. Article
  5. Journal of the American Chemical Society · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Loading Linear Arrays of CuAngewandte Chemie (International ed. in English) · 2021
    Article
  13. Article
  14. Bis(2-methyl-pyridinium) tetra-chlorido-cuprate(II): synthesis, structure and Hirshfeld surface analysis.Acta crystallographica. Section E, Crystallographic communications · 2021
    Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Oligo-Quinolylene-Vinylene Foldamers.Chemistry (Weinheim an der Bergstrasse, Germany) · 2021
    Article
  20. Aromatic Foldamer Helices as α-Helix Extended Surface Mimetics.Chemistry (Weinheim an der Bergstrasse, Germany) · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Krzysztof ZiachUniv. Bordeaux - CNRS - IPB, CBMN Laboratory (UMR5248), Institut Européen de Chimie et Biologie, Pessac, France.ORCID http://orcid.org/0000-0001-5465-9407
Céline CholletUniv. Bordeaux - CNRS - IPB, CBMN Laboratory (UMR5248), Institut Européen de Chimie et Biologie, Pessac, France.
Vincent ParissiUniv. Bordeaux - CNRS, Laboratoire de Microbiologie Fondamentale et Pathogénicité (UMR 5234), Bordeaux, France.
Panchami PrabhakaranUniv. Bordeaux - CNRS - IPB, CBMN Laboratory (UMR5248), Institut Européen de Chimie et Biologie, Pessac, France.ORCID http://orcid.org/0000-0001-7530-0663
Mathieu MarchivieUniv. Bordeaux - CNRS, ICMCB (UPR9048), Pessac, France.ORCID http://orcid.org/0000-0003-1362-0797
Valentina CorvagliaUniv. Bordeaux - CNRS - IPB, CBMN Laboratory (UMR5248), Institut Européen de Chimie et Biologie, Pessac, France.ORCID http://orcid.org/0000-0002-6180-5975
Partha Pratim BoseUniv. Bordeaux - CNRS - IPB, CBMN Laboratory (UMR5248), Institut Européen de Chimie et Biologie, Pessac, France.ORCID http://orcid.org/0000-0003-4387-3584
Katta Laxmi-ReddyUniv. Bordeaux - CNRS - IPB, CBMN Laboratory (UMR5248), Institut Européen de Chimie et Biologie, Pessac, France.
Frédéric GoddeUniv. Bordeaux - CNRS - IPB, CBMN Laboratory (UMR5248), Institut Européen de Chimie et Biologie, Pessac, France.
Jean-Marie SchmitterUniv. Bordeaux - CNRS - IPB, CBMN Laboratory (UMR5248), Institut Européen de Chimie et Biologie, Pessac, France.
Stéphane ChaignepainUniv. Bordeaux - CNRS - IPB, CBMN Laboratory (UMR5248), Institut Européen de Chimie et Biologie, Pessac, France.
Philippe PourquierINSERM U1194, Institut de Recherche en Cancérologie de Montpellier & Université de Montpellier, Montpellier, France.ORCID http://orcid.org/0000-0001-5326-3005
Ivan HucUniv. Bordeaux - CNRS - IPB, CBMN Laboratory (UMR5248), Institut Européen de Chimie et Biologie, Pessac, France. ivan.huc@cup.lmu.de.ORCID http://orcid.org/0000-0001-7036-9696

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Numerous essential biomolecular processes require the recognition of DNA surface features by proteins. Molecules mimicking these features could potentially act as decoys and interfere with pharmacologically or therapeutically relevant protein-DNA interactions. Although naturally occurring DNA-mimicking proteins have been described, synthetic tunable molecules that mimic the charge surface of double-stranded DNA are not known. Here, we report the design, synthesis and structural characterization of aromatic oligoamides that fold into single helical conformations and display a double helical array of negatively charged residues in positions that match the phosphate moieties in B-DNA. These molecules were able to inhibit several enzymes possessing non-sequence-selective DNA-binding properties, including topoisomerase 1 and HIV-1 integrase, presumably through specific foldamer-protein interactions, whereas sequence-selective enzymes were not inhibited. Such modular and synthetically accessible DNA mimics provide a versatile platform to design novel inhibitors of protein-DNA interactions.

Indexed as

AmidesDNA, B-FormNucleic Acid ConformationSurface PropertiesAmidesDNA, B-Form

Identifiers

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.