Evidence map›Paper›PMID 29610339›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

The

Savannah L Logan, Jacob Thomas, Jinyuan Yan, Ryan P Baker, Drew S Shields, Joao B Xavier, Brian K Hammer, Raghuveer Parthasarathy

Abstract readVideo-Audio Media
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 107 papers.

0numbers the graph read from it
0cells of the map it votes in
107citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

107 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Review
  10. Characterizing trajectories of innate immune cells in larval zebrafish.bioRxiv : the preprint server for biology · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Multiplicity of type 6 secretion system toxins limits the evolution of resistance.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  17. ThemBio · 2025
    Article
  18. Article
  19. Article
  20. Article

47 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Savannah L LoganInstitute of Molecular Biology, Materials Science Institute and Department of Physics, The University of Oregon, Eugene, OR 97403.
Jacob ThomasSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332.
Jinyuan YanComputational and Systems Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065.
Ryan P BakerInstitute of Molecular Biology, Materials Science Institute and Department of Physics, The University of Oregon, Eugene, OR 97403.
Drew S ShieldsInstitute of Molecular Biology, Materials Science Institute and Department of Physics, The University of Oregon, Eugene, OR 97403.
Joao B XavierComputational and Systems Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065.
Brian K HammerSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332.
Raghuveer ParthasarathyInstitute of Molecular Biology, Materials Science Institute and Department of Physics, The University of Oregon, Eugene, OR 97403; raghu@uoregon.edu.ORCID 0000-0002-6006-4749

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Zebrafish FacilityP01HD022486 · NICHD · UNIVERSITY OF OREGON · PI EISEN, JUDITH S · 1987 to 2017
$28.8M
Research Area IIIP50GM098911 · NIGMS · UNIVERSITY OF OREGON · PI PARTHASARATHY, RAGHUVEER · 2012 to 2016
$9.8M
NCI NIH HHS P30 CA008748NICHD NIH HHS P01 HD022486NIGMS NIH HHS P50 GM098911
6 · The paper itself

Abstract

Host-associated microbiota help defend against bacterial pathogens; however, the mechanisms by which pathogens overcome this defense remain largely unknown. We developed a zebrafish model and used live imaging to directly study how the human pathogen

Indexed as

Gastrointestinal MicrobiomeActinsAeromonas veroniiAnimalsAntibiosisBacterial ProteinsGastrointestinal MotilityGerm-Free LifeHost-Pathogen InteractionsSymbiosisType VI Secretion SystemsVibrio choleraeZebrafishActinsBacterial ProteinsType VI Secretion Systemsmicrobiotaperistalsistype VI secretion systemVibrio choleraezebrafish

Identifiers

PMID29610339
PMCPMC5910850

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.