Evidence map›Paper›PMID 29610215›Full record

ArticleGenetics2018

Genetic Control of Genomic Alterations Induced in Yeast by Interstitial Telomeric Sequences.

Anthony Moore, Margaret Dominska, Patricia Greenwell, Anna Y Aksenova, Sergei Mirkin, Thomas Petes

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Practical Approaches for the YeastInternational journal of molecular sciences · 2023
    Review
  4. Article
  5. Article
  6. Host translesion polymerases are required for viral genome integrity.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  7. Article
  8. Trapped topoisomerase II initiates formation of de novo duplications via the nonhomologous end-joining pathway in yeast.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  9. Article
  10. Article
  11. Transposon mobilization in the human fungal pathogenProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  12. Review
  13. Telomeric small RNAs in the genusRNA (New York, N.Y.) · 2019
    Article
  14. Article
  15. Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Anthony MooreDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina 27710.
Margaret DominskaDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina 27710.
Patricia GreenwellDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina 27710.
Anna Y AksenovaLaboratory of Amyloid Biology, St. Petersburg State University, 199034, Russia.
Sergei MirkinDepartment of Biology, Tufts University, Medford, Massachusetts 02155.
Thomas PetesDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina 27710 tom.petes@duke.edu.ORCID 0000-0003-4890-8002
Duke Medical Center · USDuke University Hospital · USSt Petersburg University · RUTufts University · US

Funding

Mutations Arising During DNA RepairP01GM105473 · NIGMS · BRANDEIS UNIVERSITY · PI LOVETT, SUSAN THOMAS · 2014 to 2018
$8.6M
Genetics Training Grant-Year 26T32GM007754 · NIGMS · DUKE UNIVERSITY · PI HAASE, STEVEN B · 1985 to 2019
$8.3M
Genetic regulation of genome stability in yeastR35GM118020 · NIGMS · DUKE UNIVERSITY · PI PETES, THOMAS · 2016 to 2025
$7.0M
RECOMBINATION IN YEASTR01GM024110 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI PETES, THOMAS · 1985 to 2015
$6.1M
INSTABILITY OF SIMPLE REPETITIVE DNA SEQUENCES IN YEASTR01GM052319 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI PETES, THOMAS · 1995 to 2015
$4.9M
REPLICATION OF SIMPLE DNA REPEATSR01GM060987 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI MIRKIN, SERGEI · 2001 to 2017
$4.9M
NIGMS NIH HHS P01 GM105473NIGMS NIH HHS R01 GM024110NIGMS NIH HHS R01 GM052319NIGMS NIH HHS R01 GM060987NIGMS NIH HHS R35 GM118020NIGMS NIH HHS T32 GM007754
6 · The paper itself

Abstract

In many organisms, telomeric sequences can be located internally on the chromosome in addition to their usual positions at the ends of the chromosome. In humans, such interstitial telomeric sequences (ITSs) are nonrandomly associated with translocation breakpoints in tumor cells and with chromosome fragile sites (regions of the chromosome that break in response to perturbed DNA replication). We previously showed that ITSs in yeast generated several different types of instability, including terminal inversions (recombination between the ITS and the "true" chromosome telomere) and point mutations in DNA sequences adjacent to the ITS. In the current study, we examine the genetic control of these events. We show that the terminal inversions occur by the single-strand annealing pathway of DNA repair following the formation of a double-stranded DNA break within the ITS. The point mutations induced by the ITS require the error-prone DNA polymerase ζ. Unlike the terminal inversions, these events are not initiated by a double-stranded DNA break, but likely result from the error-prone repair of a single-stranded DNA gap or recruitment of DNA polymerase ζ in the absence of DNA damage.

Indexed as

Genomic InstabilityRecombinational DNA RepairDNA Breaks, Double-StrandedDNA-Directed DNA PolymeraseGenome, FungalSaccharomyces cerevisiaeSequence InversionTelomereDNA-Directed DNA PolymeraseDNA polymerase zetaDNA replicationinterstitial telomeric repeatsinversionsmutagenesisrecombination

Identifiers

PMID29610215
PMCPMC5972418
OpenAlexW2796235790

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.