Evidence map›Paper›PMID 29609542›Full record

ArticleBMC microbiology2018

Gastrointestinal microbial community changes in Atlantic cod (Gadus morhua) exposed to crude oil.

Andrea Bagi, Even Sannes Riiser, Hilde Steine Molland, Bastiaan Star, Thomas H A Haverkamp, Magne Olav Sydnes, Daniela Maria Pampanin

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 35 citations in OpenAlex.

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  11. A SingleFrontiers in microbiology · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Andrea BagiDepartment of Mathematics and Natural Sciences, University of Stavanger, N-4036, Stavanger, Norway. anba@iris.no.ORCID 0000-0003-0909-6398
Even Sannes RiiserCentre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, PO Box 1066, Blindern, N-0316, Oslo, Norway.
Hilde Steine MollandDepartment of Mathematics and Natural Sciences, University of Stavanger, N-4036, Stavanger, Norway.
Bastiaan StarCentre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, PO Box 1066, Blindern, N-0316, Oslo, Norway.
Thomas H A HaverkampCentre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, PO Box 1066, Blindern, N-0316, Oslo, Norway.
Magne Olav SydnesDepartment of Mathematics and Natural Sciences, University of Stavanger, N-4036, Stavanger, Norway.
Daniela Maria PampaninDepartment of Mathematics and Natural Sciences, University of Stavanger, N-4036, Stavanger, Norway.
University of Oslo · NOInternational Research Institute of Stavanger · NOUniversity of Stavanger · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe expansion of offshore oil exploration increases the risk of marine species being exposed to oil pollution in currently pristine areas. The adverse effects of oil exposure through toxic properties of polycyclic aromatic hydrocarbons (PAHs) have been well studied in Atlantic cod (Gadus morhua). Nevertheless, the fate of conjugated metabolites in the intestinal tract and their effect on the diversity of intestinal microbial community in fish is less understood. Here, we investigated the intestinal microbial community composition of Atlantic cod after 28 days of exposure to crude oil (concentration range 0.0-0.1 mg/L).

resultsAnalysis of PAH metabolites in bile samples confirmed that uptake and biotransformation of oil compounds occurred as a result of the exposure. Various evidence for altered microbial communities was found in fish exposed to high (0.1 mg/L) and medium (0.05 mg/L) concentrations of oil when compared to fish exposed to low oil concentration (0.01 mg/L) or no oil (control). First, altered banding patterns were observed on denaturing gradient gel electrophoresis for samples pooled from each treatment group. Secondly, based on 16S rRNA sequences, higher levels of oil exposure were associated with a loss of overall diversity of the gut microbial communities. Furthermore, 8 operational taxonomic units (OTUs) were found to have significantly different relative abundances in samples from fishes exposed to high and medium oil concentrations when compared to samples from the control group and low oil concentration. Among these, only one OTU, a Deferribacterales, had increased relative abundance in samples from fish exposed to high oil concentration.

conclusionsThe results presented herein contribute to a better understanding of the effects of oil contamination on the gut microbial community changes in fish and highlight the importance of further studies into the area. Our findings suggest that increased relative abundance of bacteria belonging to the order Deferribacterales may be indicative of exposure to oil at concentrations higher than 0.05 mg/L.

Indexed as

PetroleumAnimalsBacteriaBiodiversityBiotransformationDNA, BacterialEnvironmental MonitoringFishesGadus morhuaGastrointestinal MicrobiomeIndansMicrobiotaPhylogenyPolycyclic Aromatic HydrocarbonsRNA, Ribosomal, 16SWater Pollutants, ChemicalAmplidioneDNA, BacterialIndansPetroleumPolycyclic Aromatic HydrocarbonsRNA, Ribosomal, 16SWater Pollutants, ChemicalAtlantic codDeferribacteralesFish gut microbiomeIntestinal microbiomeOil exposurePolycyclic aromatic hydrocarbons

Identifiers

PMID29609542
PMCPMC5879832
OpenAlexW2796361404

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.