Evidence map›Paper›PMID 29608884›Full record

ArticleGastroenterology2018

Detection of Mutations in Barrett's Esophagus Before Progression to High-Grade Dysplasia or Adenocarcinoma.

Matthew D Stachler, Nicholas D Camarda, Christopher Deitrick, Anthony Kim, Agoston T Agoston, Robert D Odze, Jason L Hornick, Anwesha Nag, Aaron R Thorner, Matthew Ducar and 6 more

Abstract read
In one paragraph

Article in Gastroenterology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
90citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

90 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Biomarker Use in Barrett's Esophagus Surveillance.The American journal of gastroenterology · 2026
    Review
  5. Article
  6. Esophageal cancer: from pathogenesis to precision therapies.Signal transduction and targeted therapy · 2026
    Review
  7. Review
  8. Review
  9. Article
  10. Emerging Biomarkers for Managing Barrett's Esophagus.Gastrointestinal endoscopy clinics of North America · 2026
    Review
  11. Current Concepts for Diagnosing Non-Dysplastic and Dysplastic Barrett's Esophagus.Gastrointestinal endoscopy clinics of North America · 2026
    Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article

30 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Matthew D StachlerDepartment of Pathology, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts; Department of Oncologic Pathology, Dana Farber Cancer Institute, Boston, Massachusetts.
Nicholas D CamardaDepartment of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, Massachusetts; Eli and Edythe L. Broad Institute, Cambridge, Massachusetts; Department of Molecular Oncology, Dana Farber Cancer Institute, Boston, Massachusetts; Joint Center for Cancer Precision Medicine, Dana Farber Cancer Institute, Boston, Massachusetts.
Christopher DeitrickDepartment of Pathology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania.
Anthony KimDepartment of Molecular Oncology, Dana Farber Cancer Institute, Boston, Massachusetts.
Agoston T AgostonDepartment of Pathology, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts.
Robert D OdzeDepartment of Pathology, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts.
Jason L HornickDepartment of Pathology, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts.
Anwesha NagCenter for Cancer Genome Discovery, Dana Farber Cancer Institute, Boston, Massachusetts.
Aaron R ThornerCenter for Cancer Genome Discovery, Dana Farber Cancer Institute, Boston, Massachusetts.
Matthew DucarCenter for Cancer Genome Discovery, Dana Farber Cancer Institute, Boston, Massachusetts.
Amy NoffsingerInform Diagnostics Research Institute, Needham, Massachusetts.
Richard H LashInform Diagnostics Research Institute, Irving, Texas.
Mark RedstonInform Diagnostics Research Institute, Needham, Massachusetts.
Scott L CarterDepartment of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, Massachusetts; Eli and Edythe L. Broad Institute, Cambridge, Massachusetts; Department of Molecular Oncology, Dana Farber Cancer Institute, Boston, Massachusetts; Joint Center for Cancer Precision Medicine, Dana Farber Cancer Institute, Boston, Massachusetts.
Jon M DavisonDepartment of Pathology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania.
Adam J BassEli and Edythe L. Broad Institute, Cambridge, Massachusetts; Department of Molecular Oncology, Dana Farber Cancer Institute, Boston, Massachusetts. Electronic address: Adam_Bass@dfci.harvard.edu.

Funding

Tissue and Pathology ResourcesP50CA127003 · NCI · DANA-FARBER CANCER INST · PI EL-BARDEESY, NABEEL, SELLERS, WILLIAM R · 2007 to 2023
$33.2M
Transformed Esophageal Epithelial Cells and the Tumor MicroenvironmentP01CA098101 · NCI · UNIVERSITY OF PENNSYLVANIA · PI RUSTGI, ANIL K · 2003 to 2023
$31.7M
Whole Exome Approaches for Esophageal Adenocarcinoma Susceptibility GenesU54CA163060 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI CHAK, AMITABH, GUDA, KISHORE · 2011 to 2022
$14.0M
Validation & Pathology CoreU54CA163059 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RUBENSTEIN, JOEL H, WANG, THOMAS D · 2011 to 2022
$12.1M
TRAINING GRANT IN GENETICST32GM007748 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI Anne O'Donnell-Luria, Louise Wilkins-Haug · 1985 to 2026
$12.0M
Harvard Clinical and Translational Science CenterKL2TR001100 · NCATS · HARVARD MEDICAL SCHOOL · PI NADLER, LEE MARSHALL · 2013 to 2017
$8.5M
In Vivo Laser Capture MicrodissectionR01EB022077 · NIBIB · MASSACHUSETTS GENERAL HOSPITAL · PI TEARNEY, GUILLERMO J · 2016 to 2019
$2.7M
Early TP53 Mutations and Genomic Doubling as a Novel Path for Barrett's Esophagus ProgressionK08DK109209 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STACHLER, MATTHEW D · 2016 to 2021
$929k
NCATS NIH HHS KL2 TR001100NCI NIH HHS P01 CA098101NCI NIH HHS P50 CA127003NCI NIH HHS U54 CA163059NCI NIH HHS U54 CA163060NIBIB NIH HHS R01 EB022077NIDDK NIH HHS K08 DK109209NIGMS NIH HHS T32 GM007748
6 · The paper itself

Abstract

BACKGROUND &

aimsBarrett's esophagus (BE) is the greatest risk factor for esophageal adenocarcinoma (EAC), but only a small proportion of patients with BE develop cancer. Biomarkers might be able to identify patients at highest risk of progression. We investigated genomic differences in surveillance biopsies collected from patients whose BE subsequently progressed compared to patients whose disease did not progress.

methodsWe performed a retrospective case-control study of 24 patients with BE that progressed to high-grade dysplasia (HGD, n = 14) or EAC (n = 10). The control group (n = 73, called non-progressors) comprised patients with BE and at least 5 years of total endoscopic biopsy surveillance without progression to HGD or EAC. From each patient, we selected a single tissue sample obtained more than 1 year before progression (cases) or more than 2 years before the end of follow-up (controls). Pathogenic mutations, gene copy numbers, and ploidy were compared between samples from progressors and non-progressors.

resultsTP53 mutations were detected in 46% of samples from progressors and 5% of non-progressors. In this case-control sample set, TP53 mutations in BE tissues increased the adjusted risk of progression 13.8-fold (95% confidence interval, 3.2-61.0) (P < .001). We did not observe significant differences in ploidy or copy-number profile between groups. We identified 147 pathogenic mutations in 57 distinct genes-the average number of pathogenic mutations was higher in samples from progressors (n = 2.5) than non-progressors (n = 1.2) (P < .001). TP53 and other somatic mutations were recurrently detected in samples with limited copy-number changes (aneuploidy).

conclusionsIn genomic analyses of BE tissues from patients with or without later progression to HGD or EAC, we found significantly higher numbers of TP53 mutations in BE from patients with subsequent progression. These mutations were frequently detected before the onset of dysplasia or substantial changes in copy number.

Indexed as

AdenocarcinomaAdultAgedAged, 80 and overBarrett EsophagusBiopsyCase-Control StudiesDisease ProgressionEsophageal NeoplasmsEsophagoscopyFemaleHumansMaleMiddle AgedMutationPrecancerous ConditionsTP53 protein, humanTumor Suppressor Protein p53Esophageal CancerEsophagusPreneoplastic

Identifiers

PMID29608884
PMCPMC6035092

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.