Evidence map›Paper›PMID 29608723›Full record

ArticleGenome biology and evolution2018

Ancient Evolution of Mammarenaviruses: Adaptation via Changes in the L Protein and No Evidence for Host-Virus Codivergence.

Diego Forni, Chiara Pontremoli, Uberto Pozzoli, Mario Clerici, Rachele Cagliani, Manuela Sironi

Abstract read
In one paragraph

Article in Genome biology and evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Emergence of an ancient and pathogenic mammarenavirus.Emerging microbes & infections · 2023
    Article
  6. RNA virus diversity in rodents.Archives of microbiology · 2023
    Review
  7. Review
  8. Article
  9. Article
  10. Lassa Virus Genetics.Current topics in microbiology and immunology · 2023
    Article
  11. Ecology of Lassa Virus.Current topics in microbiology and immunology · 2023
    Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Diego ForniBioinformatics, Scientific Institute IRCCS E. MEDEA, Bosisio Parini, Italy.
Chiara PontremoliBioinformatics, Scientific Institute IRCCS E. MEDEA, Bosisio Parini, Italy.
Uberto PozzoliBioinformatics, Scientific Institute IRCCS E. MEDEA, Bosisio Parini, Italy.
Mario ClericiDepartment of Physiopathology and Transplantation, University of Milan, Italy.
Rachele CaglianiBioinformatics, Scientific Institute IRCCS E. MEDEA, Bosisio Parini, Italy.
Manuela SironiBioinformatics, Scientific Institute IRCCS E. MEDEA, Bosisio Parini, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Mammarenavirus genus includes several pathogenic species of rodent-borne viruses. Old World (OW) mammarenaviruses infect rodents in the Murinae subfamily and are mainly transmitted in Africa and Asia; New World (NW) mammarenaviruses are found in rodents of the Cricetidae subfamily in the Americas. We applied a selection-informed method to estimate that OW and NW mammarenaviruses diverged less than ∼45,000 years ago (ya). By incorporating phylogeographic inference, we show that NW mammarenaviruses emerged in the Latin America-Caribbean region ∼41,400-3,300 ya, whereas OW mammarenaviruses originated ∼23,100-1,880 ya, most likely in Southern Africa. Cophylogenetic analysis indicated that cospeciation did not contribute significantly to mammarenavirus-host associations. Finally, we show that extremely strong selective pressure on the viral polymerase accompanied the speciation of NW viruses. These data suggest that the evolutionary history of mammarenaviruses was not driven by codivergence with their hosts. The viral polymerase should be regarded as a major determinant of mammarenavirus adaptation.

Indexed as

PhylogeographyAcclimatizationAfricaAnimalsArenaviridaeHost-Pathogen InteractionsLatin AmericaMurinae

Identifiers

PMID29608723
PMCPMC5863214

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.