Evidence map›Paper›PMID 29608282›Full record

ArticleACS synthetic biology2018

Genetic Engineering of Bee Gut Microbiome Bacteria with a Toolkit for Modular Assembly of Broad-Host-Range Plasmids.

Sean P Leonard, Jiri Perutka, J Elijah Powell, Peng Geng, Darby D Richhart, Michelle Byrom, Shaunak Kar, Bryan W Davies, Andrew D Ellington, Nancy A Moran and 1 more

Abstract read
In one paragraph

Article in ACS synthetic biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
9.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 143 citations in OpenAlex.

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  17. MyD88 knockdown by RNAi prevents bacterial stimulation of tubeworm metamorphosis.Proceedings of the National Academy of Sciences of the United States of America · 2025
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15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Jiri Perutka
J Elijah Powell
Peng Geng
Darby D Richhart
Michelle Byrom
Shaunak Kar
Bryan W Davies
Andrew D Ellington
Nancy A Moran
Jeffrey E BarrickORCID 0000-0003-0888-7358
The University of Texas at Austin · US

Funding

Host and symbiont determinants of colonization by a co-evolved gut communityR01GM108477 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI MORAN, NANCY A. · 2014 to 2018
$1.4M
NIGMS NIH HHS R01 GM108477
6 · The paper itself

Abstract

Engineering the bacteria present in animal microbiomes promises to lead to breakthroughs in medicine and agriculture, but progress is hampered by a dearth of tools for genetically modifying the diverse species that comprise these communities. Here we present a toolkit of genetic parts for the modular construction of broad-host-range plasmids built around the RSF1010 replicon. Golden Gate assembly of parts in this toolkit can be used to rapidly test various antibiotic resistance markers, promoters, fluorescent reporters, and other coding sequences in newly isolated bacteria. We demonstrate the utility of this toolkit in multiple species of Proteobacteria that are native to the gut microbiomes of honey bees ( Apis mellifera) and bumble bees (B ombus sp.). Expressing fluorescent proteins in Snodgrassella alvi, Gilliamella apicola, Bartonella apis, and Serratia strains enables us to visualize how these bacteria colonize the bee gut. We also demonstrate CRISPRi repression in B. apis and use Cas9-facilitated knockout of an S. alvi adhesion gene to show that it is important for colonization of the gut. Beyond characterizing how the gut microbiome influences the health of these prominent pollinators, this bee microbiome toolkit (BTK) will be useful for engineering bacteria found in other natural microbial communities.

Indexed as

AnimalsBacterial ProteinsBeesClustered Regularly Interspaced Short Palindromic RepeatsGastrointestinal MicrobiomeGene Expression Regulation, BacterialGenetic EngineeringIleumMicroorganisms, Genetically-ModifiedPlasmidsPromoter Regions, GeneticProteobacteriaRepliconSerratia marcescensSymbiosisBacterial Proteinscolony collapse disorderhost-associated microbiomeprobioticssymbiotic bacteria

Identifiers

PMID29608282
PMCPMC5963681
OpenAlexW2796055314

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.