Evidence map›Paper›PMID 29608264›Full record

ArticleACS chemical biology2018

Chemical Probe to Identify the Cellular Targets of the Reactive Lipid Metabolite 2- trans-Hexadecenal.

Gopala Krishna Jarugumilli, Jong-Ryoul Choi, PuiYee Chan, Meilan Yu, Yang Sun, Baoen Chen, Jixiao Niu, Michael DeRan, Baohui Zheng, Raphael Zoeller and 2 more

Open access · greenAbstract readLetter
In one paragraph

Article in ACS chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 23 citations in OpenAlex.

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  11. S1P and plasmalogen derived fatty aldehydes in cellular signaling and functions.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Gopala Krishna JarugumilliCutaneous Biology Research Center , Massachusetts General Hospital, Harvard Medical School , Charlestown , Massachusetts 02129 , United States.
Jong-Ryoul ChoiCutaneous Biology Research Center , Massachusetts General Hospital, Harvard Medical School , Charlestown , Massachusetts 02129 , United States.
PuiYee ChanCutaneous Biology Research Center , Massachusetts General Hospital, Harvard Medical School , Charlestown , Massachusetts 02129 , United States.
Meilan YuCenter for Biomedical Mass Spectrometry, Department of Biochemistry , Boston University School of Medicine , Boston , Massachusetts 02118-2526 , United States.
Yang SunCutaneous Biology Research Center , Massachusetts General Hospital, Harvard Medical School , Charlestown , Massachusetts 02129 , United States.
Baoen ChenCutaneous Biology Research Center , Massachusetts General Hospital, Harvard Medical School , Charlestown , Massachusetts 02129 , United States.
Jixiao NiuCutaneous Biology Research Center , Massachusetts General Hospital, Harvard Medical School , Charlestown , Massachusetts 02129 , United States.
Michael DeRanCutaneous Biology Research Center , Massachusetts General Hospital, Harvard Medical School , Charlestown , Massachusetts 02129 , United States.
Baohui ZhengCutaneous Biology Research Center , Massachusetts General Hospital, Harvard Medical School , Charlestown , Massachusetts 02129 , United States.
Raphael ZoellerDepartment of Physiology and Biophysics, Center for Advanced Biomedical Research , Boston University School of Medicine , Boston , Massachusetts 02118 , United States.
Cheng LinCenter for Biomedical Mass Spectrometry, Department of Biochemistry , Boston University School of Medicine , Boston , Massachusetts 02118-2526 , United States.ORCID 0000-0003-3653-9633
Xu WuCutaneous Biology Research Center , Massachusetts General Hospital, Harvard Medical School , Charlestown , Massachusetts 02129 , United States.ORCID 0000-0002-1624-0143
Harvard University · USBoston University · US

Funding

Mass Spectrometry Resource for Biology and MedicineP41GM104603 · NIGMS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI COSTELLO, CATHERINE E. · 2012 to 2017
$10.4M
Legacy Support During Closure of the Mass Spectrometry Resource for Biology and MedicineR24GM134210 · NIGMS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI COSTELLO, CATHERINE E. · 2019 to 2021
$2.1M
Chemical approach to study autopalmitoylation of transcription factorsR01DK107651 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI LUO, XUELIAN, WU, XU · 2016 to 2020
$1.9M
Metabolic regulation of cellular junction proteinsR01CA181537 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI WU, XU · 2014 to 2018
$1.8M
A high throughput screen for inhibitors of mammalian glycerolipid biosynthesisR01GM107675 · NIGMS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI ZOELLER, RAPHAEL ANDREW · 2015 to 2017
$933k
NCI NIH HHS R01 CA181537NIDDK NIH HHS R01 DK107651NIGMS NIH HHS P41 GM104603NIGMS NIH HHS R01 GM107675NIGMS NIH HHS R24 GM134210
6 · The paper itself

Abstract

Lipid-derived electrophiles (LDEs) are reactive metabolites, which can covalently modify proteins and DNA and regulate diverse cellular processes. 2- trans-Hexadecenal (2-HD) is a byproduct of sphingolipid metabolism, involved in cytoskeletal reorganization, DNA damage, and apoptosis. In addition, the loss of ALDH3A2, an enzyme removing 2-HD in cells, is responsible for Sjörgen-Larsson Syndrome (SJS), suggesting that accumulation of 2-HD could lead to pathogenesis. However, the targets and the precise mechanisms of 2-HD are not well characterized. Herein, we report an alkyne-2-HD derivative as a bioorthogonal probe to explore the functions of 2-HD. We identified more than 500 potential cellular targets. Among them, the pro-apoptotic protein Bax can be covalently modified by 2-HD directly at the conserved Cys62 residue. Our work provided new chemical tools to explore the cellular functions of LDEs and revealed new mechanistic insights of the deregulation of lipid metabolism in diseases.

Indexed as

Lipid MetabolismAldehyde OxidoreductasesAldehydesbcl-2-Associated X ProteinBinding SitesClick ChemistryHCT116 CellsHumansMolecular Probes2-hexadecenalAldehyde OxidoreductasesAldehydesbcl-2-Associated X Proteinlong-chain-aldehyde dehydrogenaseMolecular Probes

Identifiers

PMID29608264
PMCPMC5959771
OpenAlexW2795868113

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.