Evidence map›Paper›PMID 29606487›Full record

ArticleBioorganic & medicinal chemistry2018

Chemo-enzymatic synthesis of the exocyclic olefin isomer of thymidine monophosphate.

Dibyendu Mondal, Eric M Koehn, Jiajun Yao, David F Wiemer, Amnon Kohen

Abstract read
In one paragraph

Article in Bioorganic & medicinal chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Dibyendu MondalDepartment of Chemistry, University of Iowa, Iowa City, IA 52242-1294, United States.
Eric M KoehnDepartment of Chemistry, University of Iowa, Iowa City, IA 52242-1294, United States.
Jiajun YaoDepartment of Chemistry, University of Iowa, Iowa City, IA 52242-1294, United States.
David F WiemerDepartment of Chemistry, University of Iowa, Iowa City, IA 52242-1294, United States. Electronic address: david-wiemer@uiowa.edu.
Amnon KohenDepartment of Chemistry, University of Iowa, Iowa City, IA 52242-1294, United States.
University of Iowa · US

Funding

Viral VectorP30CA086862 · NCI · UNIVERSITY OF IOWA · PI Christopher K Laubenthal · 2000 to 2026
$70.0M
PREDOCTORAL TRAINING PROGRAM IN BIOTECHNOLOGYT32GM008365 · NIGMS · UNIVERSITY OF IOWA · PI KERNS, ROBERT JOHN · 1990 to 2021
$3.8M
Mechanistic Studies of Flavin Dependent Thymidylate SynthaseR01GM110775 · NIGMS · UNIVERSITY OF IOWA · PI QUINN, DANIEL M · 2014 to 2017
$1.2M
NIGMS NIH HHS R01 GM110775NIGMS NIH HHS T32 GM008365
6 · The paper itself

Abstract

Exocyclic olefin variants of thymidylate (dTMP) recently have been proposed as reaction intermediates for the thymidyl biosynthesis enzymes found in many pathogenic organisms, yet synthetic reports on these materials are lacking. Here we report two strategies to prepare the exocyclic olefin isomer of dTMP, which is a putative reaction intermediate in pathogenic thymidylate biosynthesis and a novel nucleotide analog. Our most effective strategy involves preserving the existing glyosidic bond of thymidine and manipulating the base to generate the exocyclic methylene moiety. We also report a successful enzymatic deoxyribosylation of a non-aromatic nucleobase isomer of thymine, which provides an additional strategy to access nucleotide analogs with disrupted ring conjugation or with reduced heterocyclic bases. The strategies reported here are straightforward and extendable towards the synthesis of various pyrimidine nucleotide analogs, which could lead to compounds of value in studies of enzyme reaction mechanisms or serve as templates for rational drug design.

Indexed as

AlkenesChemistry Techniques, SyntheticEscherichia coliGlycosylationSimplexvirusThymidine KinaseThymidine MonophosphateThymidine PhosphorylaseAlkenesThymidine KinaseThymidine MonophosphateThymidine PhosphorylaseMetabolismNucleotide analogueSynthesisThymidylate

Identifiers

PMID29606487
PMCPMC5957510
OpenAlexW2793075461

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.