Analysis of Chromatin Interactions Mediated by Specific Architectural Proteins in Drosophila Cells.

Masami Ando-Kuri, I Sarahi M Rivera, M Jordan Rowley, Victor G Corces

Abstract read

In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it

0cells of the map it votes in

1citing papers in PubMed

–field-weighted citation impact

1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

RNA-Independent Regulatory Functions of lncRNA in Complex Disease.Cancers · 2024
Review

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Masami Ando-KuriDepartment of Biology, Emory University, Atlanta, GA, USA.

I Sarahi M RiveraDepartment of Biology, Emory University, Atlanta, GA, USA.

M Jordan RowleyDepartment of Biology, Emory University, Atlanta, GA, USA.

Victor G CorcesDepartment of Biology, Emory University, Atlanta, GA, USA. vcorces@emory.edu.

Funding

MOLECULAR BASIS OF SUPPRESSION IN DROSOPHILAR01GM035463 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI CORCES, VICTOR G. · 1986 to 2020

$10.7M

NIGMS NIH HHS R01 GM035463

6 · The paper itself

Abstract

Chromosome conformation capture assays have been established, modified, and enhanced for over a decade with the purpose of studying nuclear organization. A recently published method uses in situ Hi-C followed by chromatin immunoprecipitation (HiChIP) to enrich the overall yield of significant genome-wide interactions mediated by a specific protein. Here we applied a modified version of the HiChIP protocol to retrieve the significant contacts mediated by architectural protein CP190 in D. melanogaster cells.

Indexed as

AnimalsBase SequenceBiotinylationCell LineChromatinChromatin ImmunoprecipitationDNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsGene LibraryMicrotubule-Associated ProteinsNuclear ProteinsSoftwareTranscription, GeneticChromatinCP190 protein, DrosophilaDNA-Binding ProteinsDrosophila ProteinsMicrotubule-Associated ProteinsNuclear ProteinsChromatin architectureChromatin immunoprecipitationEpigeneticsHiChIPIn situ Hi-CTranscription

Identifiers

PMID29605857

DOI10.1007/978-1-4939-7768-0_14

PMCPMC6334841

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.