Evidence map›Paper›PMID 29604169›Full record

ArticlePlant biotechnology journal2018

Genome and evolution of the shade-requiring medicinal herb Panax ginseng.

Nam-Hoon Kim, Murukarthick Jayakodi, Sang-Choon Lee, Beom-Soon Choi, Woojong Jang, Junki Lee, Hyun Hee Kim, Nomar E Waminal, Meiyappan Lakshmanan, Binh van Nguyen and 34 more

Open access · goldAbstract read
In one paragraph

Article in Plant biotechnology journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 105 papers.

0numbers the graph read from it
0cells of the map it votes in
105citing papers in PubMed
9.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

105 citing papers in PubMed, 219 citations in OpenAlex.

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45 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

44 authors at 15 institutions in 6 countries.

Nam-Hoon KimDepartment of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
Murukarthick JayakodiDepartment of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
Sang-Choon LeeDepartment of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
Beom-Soon ChoiPhyzen Genomics Institute, Seongnam, Gyeonggi-do, Korea.
Woojong JangDepartment of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
Junki LeeDepartment of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
Hyun Hee KimDepartment of Life Science, Chromosome Research Institute, Sahmyook University, Seoul, Korea.
Nomar E WaminalDepartment of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
Meiyappan LakshmananBioprocessing Technology Institute, Agency for Science, Technology and Research (A*STAR), Singapore City, Singapore.
Binh van NguyenDepartment of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
Yun Sun LeeDepartment of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
Hyun-Seung ParkDepartment of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
Hyun Jo KooDepartment of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
Jee Young ParkDepartment of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
Sampath PerumalDepartment of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
Ho Jun JohDepartment of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
Hana LeeDepartment of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
Jinkyung KimDepartment of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
In Seo KimDepartment of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
Kyunghee KimDepartment of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
Lokanand KoduruSchool of Chemical Engineering, Sungkyunkwan University, Jangan-gu, Suwon, Gyeonggi-do, Korea.
Kyo Bin KangCollege of Pharmacy and Research Institute of Pharmaceutical Science, Seoul National University, Seoul, Korea.
Sang Hyun SungCollege of Pharmacy and Research Institute of Pharmaceutical Science, Seoul National University, Seoul, Korea.
Yeisoo YuPhyzen Genomics Institute, Seongnam, Gyeonggi-do, Korea.
Daniel S ParkDepartment of Organismic and Evolutionary Biology, Harvard University Herbaria, Cambridge, MA, USA.
Doil ChoiDepartment of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
Eunyoung SeoDepartment of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
Seungill KimDepartment of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
Young-Chang KimPlanning and Coordination Division, NIHS, RDA, Wanju-gun, Jeollabuk-do, Korea.
Dong Yun HyunGinseng Research Division, National Institute of Horticultural & Herbal Science, RDA, Eumseong, Chungcheongbuk-do, Korea.
Youn-Il ParkDepartment of Biological Sciences, Chungnam National University, Daejeon, Korea.
Changsoo KimDepartment of Crop Science, Chungnam National University, Daejeon, Korea.
Tae-Ho LeeGenomics Division, National Institute of Agricultural Sciences, Jeonju, Jeollabuk-do, Korea.
Hyun Uk KimDepartment of Bioindustry and Bioresource Engineering, Plant Engineering Research Institute, Sejong University, Seoul, Korea.
Moon Soo SohDivision of Integrative Bioscience and Biotechnology, Sejong University, Seoul, Korea.
Yi LeeDepartment of Industrial Plant Science & Technology, Chungbuk National University, Cheongju, Chungcheongbuk-do, Korea.
Jun Gyo InLaboratory of Resource and Analysis, R&D Headquarters, Korea Ginseng Corporation, Daejeon, Korea.
Heui-Soo KimDepartment of Biological Sciences, College of Natural Sciences, Pusan National University, Busan, Korea.
Yong-Min KimKorean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, Korea.ORCID 0000-0001-9210-5843
Deok-Chun YangGraduate School of Biotechnology and Ginseng Bank, Kyung Hee University, Yongin, Gyeonggi-do, Korea.
Rod A WingArizona Genomics Institute, School of Plant Sciences, The University of Arizona, Tucson, AZ, USA.
Dong-Yup LeeBioprocessing Technology Institute, Agency for Science, Technology and Research (A*STAR), Singapore City, Singapore.
Andrew H PatersonPlant Genome Mapping Laboratory, College of Agricultural and Environmental Sciences and Franklin College of Arts and Sciences, University of Georgia, Athens, GA, USA.
Tae-Jin YangDepartment of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.ORCID 0000-0002-9676-8801
Seoul National University · KRSahmyook University · KRAgency for Science, Technology and Research · SGChungnam National University · KRNational Institute of Agricultural Science and Technology · KRPhyzen (South Korea) · KRHarvard University · USKT&G (South Korea) · KRKyung Hee University · KRNational Academy of Agricultural Sciences · INNational Horticultural Research Institute · NGSejong University · KRSungkyunkwan University · KRTranslational Genomics Research Institute · USUniversity of Georgia · US

Funding

Next-Generation BioGreen21 Program PJ01311901Next-Generation BioGreen21 Program PJ013238Next-Generation BioGreen21 Program PJ01334605Republic of KoreaRural Development Administration
6 · The paper itself

Abstract

Panax ginseng C. A. Meyer, reputed as the king of medicinal herbs, has slow growth, long generation time, low seed production and complicated genome structure that hamper its study. Here, we unveil the genomic architecture of tetraploid P. ginseng by de novo genome assembly, representing 2.98 Gbp with 59 352 annotated genes. Resequencing data indicated that diploid Panax species diverged in association with global warming in Southern Asia, and two North American species evolved via two intercontinental migrations. Two whole genome duplications (WGD) occurred in the family Araliaceae (including Panax) after divergence with the Apiaceae, the more recent one contributing to the ability of P. ginseng to overwinter, enabling it to spread broadly through the Northern Hemisphere. Functional and evolutionary analyses suggest that production of pharmacologically important dammarane-type ginsenosides originated in Panax and are produced largely in shoot tissues and transported to roots; that newly evolved P. ginseng fatty acid desaturases increase freezing tolerance; and that unprecedented retention of chlorophyll a/b binding protein genes enables efficient photosynthesis under low light. A genome-scale metabolic network provides a holistic view of Panax ginsenoside biosynthesis. This study provides valuable resources for improving medicinal values of ginseng either through genomics-assisted breeding or metabolic engineering.

Indexed as

Adaptation, BiologicalBiological EvolutionDiploidyGenes, ChloroplastGenes, PlantGenome, PlantGinsenosidesPanaxTetraploidyGinsenosidesadaptationevolutionginsenosidesmetabolic networkPanax ginseng

Identifiers

PMID29604169
PMCPMC6181221
OpenAlexW2794774827

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.