Evidence map›Paper›PMID 29603667›Full record

ArticleProteomics2018

A Targeted LC-MS Strategy for Low-Abundant HLA Class-I-Presented Peptide Detection Identifies Novel Human Papillomavirus T-Cell Epitopes.

Renata Blatnik, Nitya Mohan, Maria Bonsack, Lasse G Falkenby, Stephanie Hoppe, Kathrin Josef, Alina Steinbach, Sara Becker, Wiebke M Nadler, Marijana Rucevic and 3 more

Abstract read
In one paragraph

Article in Proteomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
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  15. Article
  16. Potent, Selective CARs as Potential T-Cell Therapeutics for HPV-positive Cancers.Journal of immunotherapy (Hagerstown, Md. : 1997) · 2021
    Article
  17. Article
  18. Article
  19. Are There Indeed Spliced Peptides in the Immunopeptidome?Molecular & cellular proteomics : MCP · 2021
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Renata BlatnikImmunotherapy and Immunoprevention, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120 Heidelberg, Germany.
Nitya MohanImmunotherapy and Immunoprevention, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120 Heidelberg, Germany.ORCID 0000-0002-8189-1399
Maria BonsackImmunotherapy and Immunoprevention, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120 Heidelberg, Germany.ORCID 0000-0003-2087-7451
Lasse G FalkenbyDepartment of Biochemistry and Molecular Biology, University of Southern Denmark, Odense M, Denmark.
Stephanie HoppeImmunotherapy and Immunoprevention, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120 Heidelberg, Germany.
Kathrin JosefImmunotherapy and Immunoprevention, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120 Heidelberg, Germany.ORCID 0000-0001-9026-7048
Alina SteinbachImmunotherapy and Immunoprevention, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120 Heidelberg, Germany.
Sara BeckerImmunotherapy and Immunoprevention, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120 Heidelberg, Germany.ORCID 0000-0001-5182-2360
Wiebke M NadlerDivision of Stem Cells and Cancer, German Cancer Research Center (DKFZ) and Heidelberg Institute for Stem Cell Technology and Experimental Medicine (HI-STEM), Heidelberg, Germany.ORCID 0000-0002-7673-1147
Marijana RucevicMassachusetts General Hospital, Center for Cancer Research, Charlestown, MA, USA.ORCID 0000-0003-1003-2666
Martin R LarsenDepartment of Biochemistry and Molecular Biology, University of Southern Denmark, Odense M, Denmark.ORCID 0000-0001-6203-0123
Mogjiborahman SalekImmunotherapy and Immunoprevention, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120 Heidelberg, Germany.ORCID 0000-0002-6664-4752
Angelika B RiemerImmunotherapy and Immunoprevention, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120 Heidelberg, Germany.ORCID 0000-0002-5865-0714

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

For rational design of therapeutic vaccines, detailed knowledge about target epitopes that are endogenously processed and truly presented on infected or transformed cells is essential. Many potential target epitopes (viral or mutation-derived), are presented at low abundance. Therefore, direct detection of these peptides remains a challenge. This study presents a method for the isolation and LC-MS

Indexed as

Chromatography, LiquidEpitopes, T-LymphocyteFemaleHistocompatibility Antigens Class IHumansPapillomaviridaePapillomavirus InfectionsPeptide FragmentsTandem Mass SpectrometryTumor Cells, CulturedUterine Cervical NeoplasmsEpitopes, T-LymphocyteHistocompatibility Antigens Class IPeptide Fragmentshuman papillomavirus (HPV)immunopeptidomicsimmunotherapyneoepitopestargeted mass spectrometry (MS)

Identifiers

PMID29603667
PMCPMC6033010

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.