Evidence map›Paper›PMID 29602271›Full record

ArticleMicrobiologyOpen2018

Microbial diversity of thermophiles with biomass deconstruction potential in a foliage-rich hot spring.

Li Sin Lee, Kian Mau Goh, Chia Sing Chan, Geok Yuan Annie Tan, Wai-Fong Yin, Chun Shiong Chong, Kok-Gan Chan

Open access · goldAbstract read
In one paragraph

Article in MicrobiologyOpen, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 38 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Li Sin LeeISB (Genetics), Faculty of Science, University of Malaysia, Kuala Lumpur, Malaysia.ORCID 0000-0003-0851-907X
Kian Mau GohFaculty of Biosciences and Medical Engineering, Universiti Teknologi Malaysia, Skudai, Johor, Malaysia.ORCID 0000-0002-2839-8722
Chia Sing ChanFaculty of Biosciences and Medical Engineering, Universiti Teknologi Malaysia, Skudai, Johor, Malaysia.
Geok Yuan Annie TanISB (Genetics), Faculty of Science, University of Malaysia, Kuala Lumpur, Malaysia.
Wai-Fong YinISB (Genetics), Faculty of Science, University of Malaysia, Kuala Lumpur, Malaysia.
Chun Shiong ChongFaculty of Biosciences and Medical Engineering, Universiti Teknologi Malaysia, Skudai, Johor, Malaysia.
Kok-Gan ChanISB (Genetics), Faculty of Science, University of Malaysia, Kuala Lumpur, Malaysia.
UCSI University · MYUniversity of Technology Malaysia · MYJiangsu University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ability of thermophilic microorganisms and their enzymes to decompose biomass have attracted attention due to their quick reaction time, thermostability, and decreased risk of contamination. Exploitation of efficient thermostable glycoside hydrolases (GHs) could accelerate the industrialization of biofuels and biochemicals. However, the full spectrum of thermophiles and their enzymes that are important for biomass degradation at high temperatures have not yet been thoroughly studied. We examined a Malaysian Y-shaped Sungai Klah hot spring located within a wooded area. The fallen foliage that formed a thick layer of biomass bed under the heated water of the Y-shaped Sungai Klah hot spring was an ideal environment for the discovery and analysis of microbial biomass decay communities. We sequenced the hypervariable regions of bacterial and archaeal 16S rRNA genes using total community DNA extracted from the hot spring. Data suggested that 25 phyla, 58 classes, 110 orders, 171 families, and 328 genera inhabited this hot spring. Among the detected genera, members of Acidimicrobium, Aeropyrum, Caldilinea, Caldisphaera, Chloracidobacterium, Chloroflexus, Desulfurobacterium, Fervidobacterium, Geobacillus, Meiothermus, Melioribacter, Methanothermococcus, Methanotorris, Roseiflexus, Thermoanaerobacter, Thermoanaerobacterium, Thermoanaerobaculum, and Thermosipho were the main thermophiles containing various GHs that play an important role in cellulose and hemicellulose breakdown. Collectively, the results suggest that the microbial community in this hot spring represents a good source for isolating efficient biomass degrading thermophiles and thermozymes.

Indexed as

BiodiversityBacteriaBacterial ProteinsBiomassCelluloseGlycoside HydrolasesHot SpringsHot TemperaturePhylogenyBacterial ProteinsCelluloseGlycoside HydrolasesBiofilmbiofuelbiomass degradationcellulasehot springthermophile

Identifiers

PMID29602271
PMCPMC6291792
OpenAlexW2794723395

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.