Evidence map›Paper›PMID 29602264›Full record

ArticleThe Plant journal : for cell and molecular biology2018

The cyclin-dependent kinase G group defines a thermo-sensitive alternative splicing circuit modulating the expression of Arabidopsis ATU2AF65A.

Nicola Cavallari, Candida Nibau, Armin Fuchs, Despoina Dadarou, Andrea Barta, John H Doonan

Open access · hybridAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
8.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 54 citations in OpenAlex.

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  19. Method for fast staining and obtaining high-magnification and high-resolution cell images ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 2 countries.

Nicola CavallariMax F. Perutz Laboratories, Medical University of Vienna, Vienna Biocenter, Dr Bohr-Gasse 9/3, A-1030, Wien, Austria.
Candida NibauInstitute of Biological, Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, SY23 3EB, UK.
Armin FuchsMax F. Perutz Laboratories, Medical University of Vienna, Vienna Biocenter, Dr Bohr-Gasse 9/3, A-1030, Wien, Austria.
Despoina DadarouInstitute of Biological, Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, SY23 3EB, UK.
Andrea BartaMax F. Perutz Laboratories, Medical University of Vienna, Vienna Biocenter, Dr Bohr-Gasse 9/3, A-1030, Wien, Austria.
John H DoonanInstitute of Biological, Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, SY23 3EB, UK.
Aberystwyth University · GBInstitute of Biological, Environmental and Rural Sciences · GBMax Perutz Labs · ATMedical University of Vienna · ATVienna Biocenter · AT

Funding

Biotechnology and Biological Sciences Research Council BB/M009459/1
6 · The paper itself

Abstract

The ability to adapt growth and development to temperature variations is crucial to generate plant varieties resilient to predicted temperature changes. However, the mechanisms underlying plant response to progressive increases in temperature have just started to be elucidated. Here, we report that the cyclin-dependent kinase G1 (CDKG1) is a central element in a thermo-sensitive mRNA splicing cascade that transduces changes in ambient temperature into differential expression of the fundamental spliceosome component, ATU2AF65A. CDKG1 is alternatively spliced in a temperature-dependent manner. We found that this process is partly dependent on both the cyclin-dependent kinase G2 (CDKG2) and the interacting co-factor CYCLIN L1 (CYCL1), resulting in two distinct messenger RNAs. The relative abundance of both CDKG1 transcripts correlates with ambient temperature and possibly with different expression levels of the associated protein isoforms. Both CDKG1 alternative transcripts are necessary to fully complement the expression of ATU2AF65A across the temperature range. Our data support a previously unidentified temperature-dependent mechanism based on the alternative splicing (AS) of CDKG1 and regulated by CDKG2 and CYCL1. We propose that changes in ambient temperature affect the relative abundance of CDKG1 transcripts, and this in turn translates into differential CDKG1 protein expression coordinating the AS of ATU2AF65A.

Indexed as

Alternative SplicingArabidopsisArabidopsis ProteinsCell FractionationCyclin-Dependent KinasesGene Expression Regulation, PlantReverse Transcriptase Polymerase Chain ReactionRNA Splicing FactorsSpliceosomesTemperatureArabidopsis ProteinsAT4G36690 protein, ArabidopsisCDKG1 protein, ArabidopsisCyclin-Dependent KinasesRNA Splicing Factorsalternative splicingArabidopsiscyclin-dependent kinasesthermo-sensitivity

Identifiers

PMID29602264
PMCPMC6032924
OpenAlexW2794442946

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.