Evidence map›Paper›PMID 29601508›Full record

ArticleViruses2018

Deep Sequencing-Based Transcriptome Profiling Reveals Avian Interferon-Stimulated Genes and Provides Comprehensive Insight into Newcastle Disease Virus-Induced Host Responses.

Weiwei Liu, Xusheng Qiu, Cuiping Song, Yingjie Sun, Chunchun Meng, Ying Liao, Lei Tan, Zhuang Ding, Xiufan Liu, Chan Ding

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 32 citations in OpenAlex.

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  8. Review
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  12. A Role for the Chicken Interferon-Stimulated GeneFrontiers in microbiology · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. Microorganisms · 2021
    Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Weiwei LiuShanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China. liuweiwei@shvri.ac.cn.
Xusheng QiuShanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China. xsqiu@shvri.ac.cn.
Cuiping SongShanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China. scp@shvri.ac.cn.
Yingjie SunShanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China. sunyingjie@shvri.ac.cn.
Chunchun MengShanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China. mengcc@shvri.ac.cn.
Ying LiaoShanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China. liaoying@shvri.ac.cn.
Lei TanShanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China. tanlei@shvri.ac.cn.
Zhuang DingCollege of Veterinary Medicine, Jilin University, Changchun 130062, China. dingzhuang@jlu.edu.cn.
Xiufan LiuSchool of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China. xfliu@yzu.edu.cn.
Chan DingShanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China. shoveldeen@shvri.ac.cn.
Chinese Academy of Agricultural Sciences · CNJilin University · CNYangzhou University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Newcastle disease virus (NDV) is an avian paramyxovirus that causes significant economic losses to the poultry industry worldwide, with variations in NDV pathogenicity due to the differences in virulence between strains. However, there is limited knowledge regarding the avian innate immune response to NDV infection. In this study, transcriptional profiles were obtained from chick embryo fibroblasts (CEFs) that were infected with the highly virulent NDV Herts/33 strain or the nonvirulent LaSota strain using RNA-seq. This yielded 8433 transcripts that were associated with NDV infection. This list of candidate genes was then further examined using Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses. It showed a high enrichment in the areas of cellular components and metabolic processes, with the cellular components possibly being associated with NDV pathogenicity. Among these 8433 transcripts, 3616 transcripts associated with interferon-stimulated genes (ISGs) were obtained; these transcripts are involved in metabolic processes, including protein phosphorylation and protein modification. These results provide further insight into the identification of genes that are involved in NDV infection. The global survey of changes in gene expression performed herein provides new insights into the complicated molecular mechanisms underlying virus and host interactions and will enable the use of new strategies to protect chickens against this virus.

Indexed as

AnimalsCells, CulturedChick EmbryoChickensFibroblastsGene ExpressionGene Expression ProfilingGene Expression RegulationHigh-Throughput Nucleotide SequencingHost-Pathogen InteractionsImmunity, InnateInterferon Regulatory FactorsNewcastle disease virusPoultry DiseasesSequence Analysis, RNAVirulenceInterferon Regulatory FactorsCEFchickenIFN responseNewcastle disease virusRNA-seqtranscript

Identifiers

PMID29601508
PMCPMC5923456
OpenAlexW2795364721

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.