Evidence map›Paper›PMID 29600411›Full record

ArticleCurrent microbiology2018

Differential Modulation of Endophytic Microbiome of Ginger in the Presence of Beneficial Organisms, Pathogens and Both as Identified by DGGE Analysis.

Rohini Sabu, R Aswani, Priya Prabhakaran, B Krishnakumar, E K Radhakrishnan

Abstract read
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Article in Current microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Rohini SabuSchool of Biosciences, Mahatma Gandhi University, PD Hills (PO), Kottayam, Kerala, 686560, India.
R AswaniSchool of Biosciences, Mahatma Gandhi University, PD Hills (PO), Kottayam, Kerala, 686560, India.
Priya PrabhakaranEnvironmental Technology Division, CSIR- National Institute for Interdisciplinary Science and Technology, Council of Scientific and Industrial Research, Thiruvananthapuram, 695019, India.
B KrishnakumarEnvironmental Technology Division, CSIR- National Institute for Interdisciplinary Science and Technology, Council of Scientific and Industrial Research, Thiruvananthapuram, 695019, India.
E K RadhakrishnanSchool of Biosciences, Mahatma Gandhi University, PD Hills (PO), Kottayam, Kerala, 686560, India. radhakrishnanek@mgu.ac.in.

Funding

Kerala State Council for Science, Technology and Environment -Science Research Scheme 274/2015, KSCSTE Dated 6 July 2015The Kerala State Council for Science, Technology and Environment for the KSCSTE - Fellowship 010 - 40/FSHP/2010CSTE
6 · The paper itself

Abstract

Endophytic microorganisms play a significant role in plants response to beneficial organisms and pathogens. In the current study, endophytic microorganisms from Zingiber officinale were screened for in vitro inhibition against Pythium myriotylum. From this, Burkholderia vietnamiensis ZoB74 was selected as an organism with remarkable antifungal effect. Further, the study focussed on analysis of in vivo changes in endophytic bacterial community of Z. officinale in presence of selected organisms and the pathogen P. myriotylum by PCR-DGGE. 16S rDNA sequencing of bacterial community after DGGE has resulted in the identification of a group of uncultured bacteria as the predominant microbial community of rhizome under various conditions of treatment. High frequency dominance of these endophytic bacteria suggests their role in disease resistance to soft rot in ginger. This also revealed the variation of endophytic microbiome of Z. officinale under biotic stress. Hence the study provides molecular insight into uncultured microbiome and its stress-inducible variation in ginger rhizome.

Indexed as

BurkholderiaDenaturing Gradient Gel ElectrophoresisDisease ResistanceEndophytesMicrobiotaPlant DiseasesPythiumRhizomeRNA, Ribosomal, 16SZingiber officinaleRNA, Ribosomal, 16S

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.