Evidence map›Paper›PMID 29600044›Full record

ArticleJournal of thoracic disease2018

Identification of the key transcription factors in esophageal squamous cell carcinoma.

Yuefeng Zhang, Yanzhao Xu, Zhenhua Li, Yonggang Zhu, Shiwang Wen, Mingbo Wang, Huilai Lv, Fan Zhang, Ziqiang Tian

Open access · hybridAbstract read
In one paragraph

Article in Journal of thoracic disease, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
5.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 40 citations in OpenAlex.

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  14. Alterations in the CaExploration of targeted anti-tumor therapy · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Yuefeng ZhangDepartment of Thoracic Surgery, The Fourth Hospital of Hebei Medical University, Shijiazhuang 050035, China.
Yanzhao XuDepartment of Thoracic Surgery, The Fourth Hospital of Hebei Medical University, Shijiazhuang 050035, China.
Zhenhua LiDepartment of Thoracic Surgery, The Fourth Hospital of Hebei Medical University, Shijiazhuang 050035, China.
Yonggang ZhuDepartment of Thoracic Surgery, The Fourth Hospital of Hebei Medical University, Shijiazhuang 050035, China.
Shiwang WenDepartment of Thoracic Surgery, The Fourth Hospital of Hebei Medical University, Shijiazhuang 050035, China.
Mingbo WangDepartment of Thoracic Surgery, The Fourth Hospital of Hebei Medical University, Shijiazhuang 050035, China.
Huilai LvDepartment of Thoracic Surgery, The Fourth Hospital of Hebei Medical University, Shijiazhuang 050035, China.
Fan ZhangDepartment of Thoracic Surgery, The Fourth Hospital of Hebei Medical University, Shijiazhuang 050035, China.
Ziqiang TianDepartment of Thoracic Surgery, The Fourth Hospital of Hebei Medical University, Shijiazhuang 050035, China.
Hebei Medical University · CNFourth Hospital of Hebei Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundEsophageal cancer (EC) is a common human malignancy worldwide. Esophageal squamous cell carcinoma (ESCC) is the predominant subtype in China. The tumorigenesis mechanism in ESCC is unclear. The aim of this study was to identify key transcription factors (TFs) in ESCC and elucidate the mechanism of it.

methodsA total of ten published microarray datasets of ESCC was downloaded from the Gene Expression Omnibus (GEO). Then, bioinformatics analyses including differentially expressed genes (DEGs) analysis, gene ontology (GO) annotation, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment, TFs-genes regulatory network construction was performed. Quantitative real-time polymerase chain reactions (qRT-PCR) were used to detect the expression levels of TFs and DEGs in ESCC. The association between stage and TFs and the association between survival and TFs were evaluated based on The Cancer Genome Atlas (TCGA), respectively.

resultsA total of 1,248 dysregulated genes were selected as DEGs in ESCC. A total of 26 TFs and corresponding target-genes were identified. The ESCC-specific transcriptional regulatory network was constructed. The network was consisted of 882 edges and 631 nodes.

conclusions

Indexed as

esophageal squamous cell carcinoma (ESCC)expression profilingregulatory networkTranscription factors (TFs)

Identifiers

PMID29600044
PMCPMC5863113
OpenAlexW2787720762

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.