Evidence map›Paper›PMID 29596642›Full record

ArticleNucleic acids research2018

The DNA damage response activates HPV16 late gene expression at the level of RNA processing.

Kersti Nilsson, Chengjun Wu, Naoko Kajitani, Haoran Yu, Efthymios Tsimtsirakis, Lijing Gong, Ellenor B Winquist, Jacob Glahder, Lars Ekblad, Johan Wennerberg and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Alternative splicing in the genome of HPV and its regulation.Frontiers in cellular and infection microbiology · 2024
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
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  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Kersti NilssonDepartment of Laboratory Medicine, Lund University, BMC-B13, 221 84 Lund, Sweden.
Chengjun WuDepartment of Laboratory Medicine, Lund University, BMC-B13, 221 84 Lund, Sweden.
Naoko KajitaniDepartment of Laboratory Medicine, Lund University, BMC-B13, 221 84 Lund, Sweden.
Haoran YuDepartment of Laboratory Medicine, Lund University, BMC-B13, 221 84 Lund, Sweden.
Efthymios TsimtsirakisDepartment of Laboratory Medicine, Lund University, BMC-B13, 221 84 Lund, Sweden.
Lijing GongDepartment of Laboratory Medicine, Lund University, BMC-B13, 221 84 Lund, Sweden.
Ellenor B WinquistDepartment of Laboratory Medicine, Lund University, BMC-B13, 221 84 Lund, Sweden.
Jacob GlahderDepartment of Laboratory Medicine, Lund University, BMC-B13, 221 84 Lund, Sweden.
Lars EkbladDepartment of Clinical Sciences Lund, Oncology and Pathology, Lund University, Skane University Hospital, 221 85 Lund, Sweden.
Johan WennerbergDepartment of Clinical Sciences Lund, Oto-rhino-laryngology, Head and Neck Surgery, Lund University, Skane University Hospital, 221 85 Lund, Sweden.
Stefan SchwartzDepartment of Laboratory Medicine, Lund University, BMC-B13, 221 84 Lund, Sweden.
Lund University · SESkåne University Hospital · SEBeijing Sport University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We show that the alkylating cancer drug melphalan activated the DNA damage response and induced human papillomavirus type 16 (HPV16) late gene expression in an ATM- and Chk1/2-dependent manner. Activation of HPV16 late gene expression included inhibition of the HPV16 early polyadenylation signal that resulted in read-through into the late region of HPV16. This was followed by activation of the exclusively late, HPV16 splice sites SD3632 and SA5639 and production of spliced late L1 mRNAs. Altered HPV16 mRNA processing was paralleled by increased association of phosphorylated BRCA1, BARD1, BCLAF1 and TRAP150 with HPV16 DNA, and increased association of RNA processing factors U2AF65 and hnRNP C with HPV16 mRNAs. These RNA processing factors inhibited HPV16 early polyadenylation and enhanced HPV16 late mRNA splicing, thereby activating HPV16 late gene expression.

Indexed as

RNA Processing, Post-TranscriptionalAtaxia Telangiectasia Mutated ProteinsBRCA1 ProteinCell LineCleavage And Polyadenylation Specificity FactorDNA DamageDNA, ViralGene Expression Regulation, ViralHost-Pathogen InteractionsHuman papillomavirus 16HumansMelphalanPhosphorylationPolyadenylationRNA SplicingSplicing Factor U2AFAtaxia Telangiectasia Mutated ProteinsATM protein, humanBARD1 protein, humanBRCA1 ProteinBRCA1 protein, humanCleavage And Polyadenylation Specificity FactorCPSF4 protein, humanDNA, ViralMelphalanSplicing Factor U2AFTumor Suppressor ProteinsU2AF2 protein, humanUbiquitin-Protein Ligases

Identifiers

PMID29596642
PMCPMC6007495
OpenAlexW2795010121

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.