ArticlePloS one2018
Complete chloroplast genome sequence and comparative analysis of loblolly pine (Pinus taeda L.) with related species.
Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.
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35 citing papers in PubMed.
- Comprehensive analysis of the complete chloroplast genome of white pomegranate and phylogenetic relationships within Myrtales.BMC genomics · 2026Article
- Analysis of the variation and genetic stability of chloroplast genome of Pinus taeda.BMC genomics · 2026Article
- Complete chloroplast genome ofFrontiers in plant science · 2026Article
- Characterization of the FourGenes · 2025Article
- cpSNP discovery and genotyping for aPeerJ · 2025Article
- Deciphering the ABA and GA biosynthesis approach of Bacillus pumilus, mechanistic approach, explaining the role of metabolic region as an aid in improving the stress tolerance.Scientific reports · 2024Article
- Comparative and phylogenetic analysis of the complete chloroplast genomes of 10 Artemisia selengensis resources based on high-throughput sequencing.BMC genomics · 2024Article
- Comparative analysis of chloroplast genomes and phylogenetic relationships in the endemic Chinese bambooFrontiers in plant science · 2024Article
- Comparative analysis ofPeerJ · 2024Article
- Complete chloroplast genome sequence ofMitochondrial DNA. Part B, Resources · 2024Article
- Assembly and annotation of the black spruce genome provide insights on spruce phylogeny and evolution of stress response.G3 (Bethesda, Md.) · 2023Article
- Assembly, annotation and analysis of the chloroplast genome of the Algarrobo tree Neltuma pallida (subfamily: Caesalpinioideae).BMC plant biology · 2023Article
- DNA:RNA Hybrids Are Major Dinoflagellate Minicircle Molecular Types.International journal of molecular sciences · 2023Article
- Comparison of plastid genomes and ITS of two sister species in Gentiana and a discussion on potential threats for the endangered species from hybridization.BMC plant biology · 2023Article
- Comparative chloroplast genome and phylogenetic analyses of Chinese Polyspora.Scientific reports · 2022Article
- Comparative analysis of complete Ilex (Aquifoliaceae) chloroplast genomes: insights into evolutionary dynamics and phylogenetic relationships.BMC genomics · 2022Article
- The first complete chloroplast genome ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2022Article
- The complete chloroplast genomes of three Hamamelidaceae species: Comparative and phylogenetic analyses.Ecology and evolution · 2022Article
- Article
- The chloroplast genome of black pepper (Frontiers in plant science · 2022Article
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9 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Pinaceae, the largest family of conifers, has a diversified organization of chloroplast (cp) genomes with two typical highly reduced inverted repeats (IRs). In the current study, we determined the complete sequence of the cp genome of an economically and ecologically important conifer tree, the loblolly pine (Pinus taeda L.), using Illumina paired-end sequencing and compared the sequence with those of other pine species. The results revealed a genome size of 121,531 base pairs (bp) containing a pair of 830-bp IR regions, distinguished by a small single copy (42,258 bp) and large single copy (77,614 bp) region. The chloroplast genome of P. taeda encodes 120 genes, comprising 81 protein-coding genes, four ribosomal RNA genes, and 35 tRNA genes, with 151 randomly distributed microsatellites. Approximately 6 palindromic, 34 forward, and 22 tandem repeats were found in the P. taeda cp genome. Whole cp genome comparison with those of other Pinus species exhibited an overall high degree of sequence similarity, with some divergence in intergenic spacers. Higher and lower numbers of indels and single-nucleotide polymorphism substitutions were observed relative to P. contorta and P. monophylla, respectively. Phylogenomic analyses based on the complete genome sequence revealed that 60 shared genes generated trees with the same topologies, and P. taeda was closely related to P. contorta in the subgenus Pinus. Thus, the complete P. taeda genome provided valuable resources for population and evolutionary studies of gymnosperms and can be used to identify related species.
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