Evidence map›Paper›PMID 29596055›Full record

ArticleJournal of integrative bioinformatics2018

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017.

Falk Schreiber, Gary D Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Sarah M Keating, Nicolas Le Novère, Chris Myers, David Nickerson, Björn Sommer and 1 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Journal of integrative bioinformatics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Finding new edges: systems approaches to MTOR signaling.Biochemical Society transactions · 2021
    Review
  4. Article
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Falk SchreiberDepartment of Computer and Information Science, University of Konstanz, Konstanz, Germany.
Gary D BaderThe Donnelly Centre, University of Toronto, Toronto, Canada.
Padraig GleesonDepartment of Neuroscience, Physiology and Pharmacology, University College London, London, UK.
Martin GolebiewskiHeidelberg Institute for Theoretical Studies (HITS), Heidelberg, Germany.
Michael HuckaCalifornia Institute of Technology, Pasadena, CA, USA.
Sarah M KeatingEuropean Bioinformatics Institute, EMBL-EBI, Cambridge, UK.
Nicolas Le NovèreBabraham Institute, Cambridge, UK.
Chris MyersUniversity of Utah, Salt Lake City, UT, USA.
David NickersonAuckland Bioengineering Institute, University of Auckland, Auckland, New Zealand.
Björn SommerDepartment of Computer and Information Science, University of Konstanz, Konstanz, Germany.
Dagmar WaltemathUniversity of Rostock, Rostock, Germany.

Funding

TR&D 3 - Network Guided Machine LearningP41GM103504 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI IDEKER, TREY · 2012 to 2024
$17.3M
Continued Support of Essential SBML Software and Community ResourcesR01GM070923 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI HUCKA, MICHAEL · 2004 to 2018
$8.0M
NIGMS NIH HHS P41 GM103504NIGMS NIH HHS R01 GM070923
6 · The paper itself

Abstract

Standards are essential to the advancement of Systems and Synthetic Biology. COMBINE provides a formal body and a centralised platform to help develop and disseminate relevant standards and related resources. The regular special issue of the Journal of Integrative Bioinformatics aims to support the exchange, distribution and archiving of these standards by providing unified, easily citable access. This paper provides an overview of existing COMBINE standards and presents developments of the last year.

Indexed as

AnimalsComputational BiologyDocumentationHumansSynthetic BiologySystems BiologyCOMBINEStandardsSynthetic BiologySystems Biology

Identifiers

PMID29596055
PMCPMC6167034

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.