Evidence map›Paper›PMID 29596046›Full record

ArticleeLife2018

Ensemble cryoEM elucidates the mechanism of insulin capture and degradation by human insulin degrading enzyme.

Zhening Zhang, Wenguang G Liang, Lucas J Bailey, Yong Zi Tan, Hui Wei, Andrew Wang, Mara Farcasanu, Virgil A Woods, Lauren A McCord, David Lee and 11 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
15.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 148 citations in OpenAlex.

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  7. Highly toxic Aβ begets more Aβ.Neural regeneration research · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 7 institutions in 2 countries.

Zhening Zhang *National Resource for Automated Molecular Microscopy, Simons Electron Microscopy Center, New York Structural Biology Center, New York, United States.
Wenguang G Liang *Ben-May Institute for Cancer Research, The University of Chicago, Chicago, United States.
Lucas J BaileyDepartment of Biochemistry and Molecular Biology, The University of Chicago, Chicago, United States.
Yong Zi TanNational Resource for Automated Molecular Microscopy, Simons Electron Microscopy Center, New York Structural Biology Center, New York, United States.ORCID http://orcid.org/0000-0001-6656-6320
Hui WeiNational Resource for Automated Molecular Microscopy, Simons Electron Microscopy Center, New York Structural Biology Center, New York, United States.
Andrew WangBen-May Institute for Cancer Research, The University of Chicago, Chicago, United States.
Mara FarcasanuBen-May Institute for Cancer Research, The University of Chicago, Chicago, United States.
Virgil A WoodsDepartment of Medicine, University of California, San Diego, La Jolla, United States.
Lauren A McCordBen-May Institute for Cancer Research, The University of Chicago, Chicago, United States.
David LeeDepartment of Medicine, University of California, San Diego, La Jolla, United States.
Weifeng ShangBioCAT, Argonne National Laboratory, Illinois, United States.
Rebecca Deprez-PoulainUniv. Lille, INSERM, Institut Pasteur de Lille, Lille, France.
Benoit DeprezUniv. Lille, INSERM, Institut Pasteur de Lille, Lille, France.
David R LiuDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, United States.
Akiko KoidePerlmutter Cancer Center, New York University School of Medicine, New York, United States.
Shohei KoidePerlmutter Cancer Center, New York University School of Medicine, New York, United States.
Anthony A KossiakoffDepartment of Biochemistry and Molecular Biology, The University of Chicago, Chicago, United States.
Sheng LiDepartment of Medicine, University of California, San Diego, La Jolla, United States.
Bridget CarragherNational Resource for Automated Molecular Microscopy, Simons Electron Microscopy Center, New York Structural Biology Center, New York, United States.ORCID https://orcid.org/0000-0002-0624-5020
Clinton S PotterNational Resource for Automated Molecular Microscopy, Simons Electron Microscopy Center, New York Structural Biology Center, New York, United States.ORCID https://orcid.org/0000-0003-2394-0831
Wei-Jen TangBen-May Institute for Cancer Research, The University of Chicago, Chicago, United States.ORCID https://orcid.org/0000-0002-8267-8995
University of Chicago · USNew York Structural Biology Center · USUniversity of California San Diego · USInserm · FRNYU Langone Health · USArgonne National Laboratory · USHarvard University · US

Funding

TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2012 to 2021
$14.7M
Time resolved SAXS studies on the RP2/Arl3 complex pp.484-485P41GM103622 · NIGMS · ILLINOIS INSTITUTE OF TECHNOLOGY · PI IRVING, THOMAS C · 2012 to 2020
$11.9M
Integrating Chemistry and Evolution to Illuminate Biology and Enable Novel TherapeuticsR35GM118062 · NIGMS · HARVARD UNIVERSITY · PI LIU, DAVID R · 2016 to 2025
$6.4M
Chaperone-Assisted Structure Determination of Membrane ProteinsR01GM117372 · NIGMS · UNIVERSITY OF CHICAGO · PI ANTHONY A KOSSIAKOFF · 2016 to 2026
$4.0M
Structure-function analysis and small molecule modulator discovery of human insulin degrading enzymeR01GM121964 · NIGMS · UNIVERSITY OF CHICAGO · PI TANG, WEI-JEN · 2017 to 2024
$3.1M
Regulation and Catalysis of Human Insulin Degrading EnzymeR01GM081539 · NIGMS · UNIVERSITY OF CHICAGO · PI TANG, WEI-JEN · 2007 to 2015
$2.6M
Howard Hughes Medical InstituteNIGMS NIH HHS P41 GM103310NIGMS NIH HHS P41 GM103622NIGMS NIH HHS R01 GM081539NIGMS NIH HHS R01 GM117372NIGMS NIH HHS R01 GM121964NIGMS NIH HHS R35 GM118062NIH HHS GM103310NIH HHS GM121964NIH HHS GM81539NIH HHS R35 GM118062NIH HHS R35 GM118062
6 · The paper itself

Abstract

Insulin degrading enzyme (IDE) plays key roles in degrading peptides vital in type two diabetes, Alzheimer's, inflammation, and other human diseases. However, the process through which IDE recognizes peptides that tend to form amyloid fibrils remained unsolved. We used cryoEM to understand both the apo- and insulin-bound dimeric IDE states, revealing that IDE displays a large opening between the homologous ~55 kDa N- and C-terminal halves to allow selective substrate capture based on size and charge complementarity. We also used cryoEM, X-ray crystallography, SAXS, and HDX-MS to elucidate the molecular basis of how amyloidogenic peptides stabilize the disordered IDE catalytic cleft, thereby inducing selective degradation by substrate-assisted catalysis. Furthermore, our insulin-bound IDE structures explain how IDE processively degrades insulin by stochastically cutting either chain without breaking disulfide bonds. Together, our studies provide a mechanism for how IDE selectively degrades amyloidogenic peptides and offers structural insights for developing IDE-based therapies.

Indexed as

Cryoelectron MicroscopyCrystallography, X-RayHumansInsulinInsulysinMass SpectrometryProtein BindingProtein ConformationProtein MultimerizationProteolysisScattering, Small AngleInsulinInsulysinamyloid peptidecryoEMhumaninsulininsulin degrading enzymeintegrative structural biologymolecular biophysicsproteostasisstructural biology

Identifiers

PMID29596046
PMCPMC5910022
OpenAlexW2795063402

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.